Detailed information NTG0344947

Bioinformatically predicted

Overview

• Name: tsaP
• Type: Machinery gene
• Locus tag: GEV42_RS00100
• Genome accession: NZ_CP045552
• Coordinates: 21264..22289 (+)
• Length: 341 a.a.
• NCBI ID: WP_003097294.1
• Uniprot ID: A0A0H2ZJL6
• Organism: Pseudomonas aeruginosa strain YT12746
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 16264..27289

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GEV42_RS00075 (GEV42_00075)	-	16453..16770 (-)	318	WP_003097288.1	tetratricopeptide repeat protein	-
GEV42_RS00080 (GEV42_00080)	trkA	16918..18291 (-)	1374	WP_003111375.1	Trk system potassium transporter TrkA	-
GEV42_RS00085 (GEV42_00085)	rsmB	18319..19623 (-)	1305	WP_034040398.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
GEV42_RS00090 (GEV42_00090)	fmt	19620..20564 (-)	945	WP_023090531.1	methionyl-tRNA formyltransferase	-
GEV42_RS00095 (GEV42_00095)	def	20619..21125 (-)	507	WP_003107059.1	peptide deformylase	-
GEV42_RS00100 (GEV42_00100)	tsaP	21264..22289 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
GEV42_RS00105 (GEV42_00105)	dprA	22424..23512 (+)	1089	WP_024928550.1	DNA-processing protein DprA	Machinery gene
GEV42_RS00110 (GEV42_00110)	-	23553..24110 (+)	558	WP_023120094.1	Sua5/YciO/YrdC/YwlC family protein	-
GEV42_RS00115 (GEV42_00115)	-	24120..25097 (-)	978	WP_003111202.1	NADPH:quinone reductase	-
GEV42_RS00120 (GEV42_00120)	hemF	25288..26205 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
GEV42_RS00125 (GEV42_00125)	aroE	26263..27087 (+)	825	WP_030047943.1	shikimate dehydrogenase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37586.01 Da
• Isoelectric Point: 9.3358

>NTDB_id=344947 GEV42_RS00100 WP_003097294.1 21264..22289(+) (tsaP) [Pseudomonas aeruginosa strain YT12746]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide

• Length: 1026 bp

>NTDB_id=344947 GEV42_RS00100 WP_003097294.1 21264..22289(+) (tsaP) [Pseudomonas aeruginosa strain YT12746]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTT
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

• LysM domain (LysM) (31-76)

3D structure

• AlphaFold DB: A0A0H2ZJL6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tsaP	Acinetobacter baumannii D1279779	36.512	100	0.393