Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GEV49_RS34455 Genome accession   NZ_CP045547
Coordinates   7668950..7670020 (+) Length   356 a.a.
NCBI ID   WP_194280200.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7193     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 7663950..7675020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV49_RS34440 (GEV49_34755) - 7665283..7666902 (+) 1620 WP_194280199.1 ABC transporter substrate-binding protein -
  GEV49_RS34445 (GEV49_34760) - 7666958..7667926 (+) 969 WP_153181199.1 ABC transporter permease -
  GEV49_RS34450 (GEV49_34765) - 7667919..7668953 (+) 1035 WP_153181200.1 ABC transporter permease -
  GEV49_RS34455 (GEV49_34770) amiE 7668950..7670020 (+) 1071 WP_194280200.1 ABC transporter ATP-binding protein Regulator
  GEV49_RS34460 (GEV49_34775) - 7670017..7671018 (+) 1002 WP_153181201.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  GEV49_RS34465 (GEV49_34780) - 7671015..7672280 (+) 1266 WP_153181202.1 NADH:flavin oxidoreductase -
  GEV49_RS34470 (GEV49_34785) - 7672304..7673725 (+) 1422 WP_228126255.1 amidase -
  GEV49_RS34475 (GEV49_34790) - 7673814..7674269 (-) 456 WP_153181204.1 DoxX family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 37333.60 Da        Isoelectric Point: 6.7711

>NTDB_id=344941 GEV49_RS34455 WP_194280200.1 7668950..7670020(+) (amiE) [Streptomyces sp. SYP-A7193]
MTPKREAATTAPAPTDGTRGTGAPPLLDATDVRTAFHTPHGAVRAVDGVSLTLSEGETLGIVGESGSGKSVLGRTLMGLI
TDGPGTTVSGTVRIGGQDVHALTPAGRRALWGTEVAMVFQDPMTSLNPVKKTGTHLSESLRLHLGLGRADARDRAVDLLR
QVGIPEPARRADQYPHELSGGMRQRVVIAMALACGPRLLIADEPTTALDVTVQKQILDLLGSLAEELRMATVLISHDLAT
VAGRTDRVAVMYAGRLVEYADTAAVFDRPRHPYSSALIASIPRLDLPPHTLLPAIEGRPPNLLHPPAGCRFAPRCDTATD
RCTTESPGLTAYAGERDAGGLVACHHPLGAAEEAAV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=344941 GEV49_RS34455 WP_194280200.1 7668950..7670020(+) (amiE) [Streptomyces sp. SYP-A7193]
GTGACCCCGAAGCGAGAGGCCGCGACCACCGCACCGGCCCCCACCGACGGCACCCGCGGCACCGGCGCACCCCCGCTGCT
CGACGCCACCGACGTACGCACCGCCTTCCACACGCCCCACGGCGCTGTCCGGGCCGTCGACGGGGTGTCGCTGACCCTGT
CCGAGGGCGAGACCCTCGGCATCGTCGGCGAGTCGGGATCCGGCAAGTCCGTGCTCGGCCGCACCCTCATGGGCCTGATC
ACCGACGGCCCCGGCACCACCGTCTCCGGCACCGTCCGGATCGGCGGCCAGGACGTCCACGCCCTCACCCCCGCCGGACG
GCGCGCCCTGTGGGGCACCGAGGTCGCCATGGTCTTCCAGGACCCGATGACCTCCCTCAACCCGGTCAAGAAGACCGGCA
CCCACCTGTCCGAGAGCCTCCGGCTCCACCTCGGTCTCGGCCGCGCCGACGCCCGGGACCGGGCCGTCGACCTGCTCCGC
CAGGTCGGCATCCCCGAACCCGCCCGGCGGGCCGACCAGTACCCGCACGAACTGTCCGGCGGCATGCGCCAGCGCGTCGT
CATCGCCATGGCCCTCGCCTGCGGCCCCCGGCTGCTCATCGCCGACGAACCCACCACCGCGCTCGACGTCACCGTGCAGA
AGCAGATCCTCGACCTGCTGGGCTCGCTCGCCGAGGAACTGCGCATGGCGACCGTGCTCATCAGCCACGACCTCGCCACC
GTCGCGGGCCGCACCGACCGCGTCGCGGTCATGTACGCGGGCCGCCTGGTCGAGTACGCGGACACCGCCGCCGTCTTCGA
CCGCCCCCGCCACCCCTACAGCAGCGCCCTGATCGCCTCCATCCCGCGCCTGGACCTGCCCCCGCACACCCTGCTGCCCG
CCATCGAGGGCCGCCCGCCCAACCTGCTGCACCCGCCCGCCGGATGCCGCTTCGCCCCGCGCTGCGACACCGCGACCGAC
CGCTGCACCACCGAGTCCCCGGGCCTGACCGCCTACGCAGGGGAGCGCGACGCCGGCGGGCTCGTCGCCTGCCACCACCC
GCTGGGCGCCGCCGAGGAGGCCGCCGTATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(257-322)

ABC transporter (ABC_tran)

(47-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

46.465

83.427

0.388
  amiE Streptococcus thermophilus LMD-9

46.465

83.427

0.388
  amiE Streptococcus salivarius strain HSISS4

46.599

82.584

0.385
  oppD Streptococcus mutans UA159

45.033

84.831

0.382