Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   GEV49_RS26465 Genome accession   NZ_CP045547
Coordinates   5966693..5968426 (-) Length   577 a.a.
NCBI ID   WP_153179988.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7193     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5961693..5973426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV49_RS26455 (GEV49_26685) - 5963523..5964620 (+) 1098 WP_153179986.1 RNA polymerase sigma factor -
  GEV49_RS26460 (GEV49_26690) rcrQ 5964765..5966693 (-) 1929 WP_153179987.1 ABC transporter ATP-binding protein Regulator
  GEV49_RS26465 (GEV49_26695) rcrP 5966693..5968426 (-) 1734 WP_153179988.1 ABC transporter ATP-binding protein Regulator
  GEV49_RS26470 (GEV49_26700) - 5968590..5970038 (-) 1449 WP_153179989.1 xylulokinase -
  GEV49_RS26475 (GEV49_26705) - 5970082..5970387 (-) 306 WP_007449397.1 YtxH domain-containing protein -
  GEV49_RS26495 (GEV49_26725) - 5971008..5971160 (-) 153 WP_228126217.1 hypothetical protein -
  GEV49_RS26500 (GEV49_26730) - 5971227..5972642 (-) 1416 WP_153179991.1 GAF domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62708.03 Da        Isoelectric Point: 7.1409

>NTDB_id=344923 GEV49_RS26465 WP_153179988.1 5966693..5968426(-) (rcrP) [Streptomyces sp. SYP-A7193]
MLIRLLRTYLRPYKKPIALLVTLQFLQTCASLYLPTLNAHIIDEGVVKGDSGYILSYGALMIGISLAQVVCNMGAVFYGA
RTAAALGRDVRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVMALGLDVPLSGV
LLGVVPVLAICVTLIVRKLRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANTELTEVSLGTGNLLAL
MFPVVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTESSVVP
PVAPVTELRRHGHLEIREAGFRYPGAEEPVLRNIGLVAKPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVNGADVR
TVDPRTLARVVSLVPQKPYLFAGTVATNLRYGNPDATDEELWHALKVAQAKGFVSDLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAELARETAEATVVIVAQRVATIRDADRIVVLDEGRVVGVGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=344923 GEV49_RS26465 WP_153179988.1 5966693..5968426(-) (rcrP) [Streptomyces sp. SYP-A7193]
GTGCTCATACGACTCCTGCGGACCTATCTCAGGCCCTACAAGAAACCCATCGCGCTGCTGGTGACGCTGCAGTTCCTTCA
GACCTGCGCCTCCCTGTACCTGCCGACCCTGAACGCGCACATCATCGACGAAGGCGTCGTGAAGGGTGACTCGGGCTACA
TCCTGAGCTACGGCGCCCTGATGATCGGCATCTCGCTGGCCCAGGTGGTCTGCAACATGGGTGCCGTCTTCTACGGCGCG
CGCACCGCGGCCGCCCTGGGCCGGGACGTGCGCGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCGCGCGAGGTGGG
CCACTTCGGCGCGCCCTCGCTGATCACGCGGACCACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CCCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGATGGCGCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGCTCGGGGTCGTGCCGGTGCTGGCGATCTGCGTCACGCTGATCGTGCGGAAGCTGCGCCCGCTGTTCCGGAAGATGCA
GGTGCGCCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
AGTACGAGCAGCAGCGCTTCCGGAAGGCCAACACCGAGCTGACCGAGGTGTCCCTCGGCACCGGCAACCTGCTGGCGCTG
ATGTTCCCGGTGGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGGCACCGAGAGCAGTGTGGTGCCG
CCGGTGGCGCCGGTCACCGAGCTGCGCCGGCACGGGCACCTGGAGATCCGGGAGGCGGGCTTCCGCTACCCCGGCGCCGA
GGAGCCGGTGCTCAGGAACATCGGCCTGGTGGCCAAGCCGGGCGAGACGACCGCCGTCATCGGCTCGACCGGCAGCGGGA
AGTCGACCCTGCTGGGCCTGGTCCCCCGCCTGTTCGACGCCACCGACGGGGAGGTCCTGGTCAACGGCGCGGACGTGCGC
ACCGTCGACCCGAGGACGCTGGCCAGGGTGGTGAGCCTGGTGCCGCAGAAGCCGTACCTCTTCGCGGGCACCGTCGCGAC
CAATCTGCGGTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGAAGGTGGCGCAGGCCAAGGGGTTCG
TCTCCGATCTTGAGGGCGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAACGTGTCCGGCGGTCAGCGCCAGCGCCTC
GCCATCGCGCGGACGCTGGTCCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCACCGA
CGCGGCGCTGCGGGCCGAGCTGGCCCGGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCGTCGTGCTGGACGAGGGGCGGGTGGTCGGCGTGGGCCGGCACCACGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.076

97.574

0.381