Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GEV49_RS26460 Genome accession   NZ_CP045547
Coordinates   5964765..5966693 (-) Length   642 a.a.
NCBI ID   WP_153179987.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7193     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5959765..5971693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV49_RS26445 (GEV49_26675) - 5960086..5961351 (+) 1266 WP_153179984.1 NAD(P)/FAD-dependent oxidoreductase -
  GEV49_RS26450 (GEV49_26680) dnaG 5961381..5963306 (+) 1926 WP_153179985.1 DNA primase -
  GEV49_RS26455 (GEV49_26685) - 5963523..5964620 (+) 1098 WP_153179986.1 RNA polymerase sigma factor -
  GEV49_RS26460 (GEV49_26690) rcrQ 5964765..5966693 (-) 1929 WP_153179987.1 ABC transporter ATP-binding protein Regulator
  GEV49_RS26465 (GEV49_26695) rcrP 5966693..5968426 (-) 1734 WP_153179988.1 ABC transporter ATP-binding protein Regulator
  GEV49_RS26470 (GEV49_26700) - 5968590..5970038 (-) 1449 WP_153179989.1 xylulokinase -
  GEV49_RS26475 (GEV49_26705) - 5970082..5970387 (-) 306 WP_007449397.1 YtxH domain-containing protein -
  GEV49_RS26495 (GEV49_26725) - 5971008..5971160 (-) 153 WP_228126217.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69656.99 Da        Isoelectric Point: 5.4296

>NTDB_id=344922 GEV49_RS26460 WP_153179987.1 5964765..5966693(-) (rcrQ) [Streptomyces sp. SYP-A7193]
MAGPAGRMMAGGGPDQRSMDFKGSSKRLVAQFRPERATLFTLLTCVVVSVGLNVVGPKILGRATDLVFAGIVGRDMPSGA
TKEQVLDDMRAHGDGNVADMLRSTDFIPGRGIDFGAVGEVLLLALATFAVAGLLMAVATRLVNRAVNRTMFRLREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIQQTLQQSMGQLINSLLTIIGVLAMMFYVSWILALVALITVPLSFVVATRVGK
RSQPQFVQQWRSTGQLNAHIEEMYTGHTLVKVFGRQEESAKQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGQLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQSADPIPGVRPEDLRGRVELD
HVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAKMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMEDGAIVEQGAHTELLAADGAYARLYKAQFAEAVAE
VG

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=344922 GEV49_RS26460 WP_153179987.1 5964765..5966693(-) (rcrQ) [Streptomyces sp. SYP-A7193]
ATGGCAGGGCCTGCGGGTCGCATGATGGCCGGGGGCGGCCCCGACCAGCGATCGATGGATTTCAAGGGGTCGAGCAAGCG
GCTCGTCGCCCAGTTCCGGCCGGAGCGGGCGACGCTGTTCACGCTGCTGACGTGCGTCGTCGTCAGTGTCGGCCTCAACG
TGGTCGGGCCGAAGATCCTCGGCCGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGGCGGGACATGCCGTCCGGGGCC
ACGAAGGAGCAGGTCCTGGACGACATGCGCGCGCACGGGGACGGCAACGTCGCCGACATGCTCCGCAGCACGGACTTCAT
CCCTGGCCGCGGCATCGACTTCGGCGCGGTCGGCGAGGTGCTGCTGCTCGCGCTGGCGACGTTCGCGGTGGCGGGGCTGC
TGATGGCGGTGGCCACGCGCCTGGTGAACCGGGCGGTGAACCGGACGATGTTCCGGCTGCGCGAGGACGTGCAGACGAAG
CTGTCCCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTGAGCCGCGCGACGAACGACATCGACAA
CATCCAGCAGACCCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCCCTGATCACCGTGCCGCTGTCCTTCGTGGTGGCCACGCGGGTGGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGCTCGACGGGGCAGCTGAACGCGCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCCAAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCACAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTCTCCAACCTGAACTACGTGCTGGTCGCG
GTGGTCGGCGGACTGCGGGTGGCCTCCGGCCAGCTGTCCATCGGCGACGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCGTCGGCGGAGCGGATCTTCGAAC
TCCTCGACGCGGAGGAGCAGTCGGCGGACCCGATCCCGGGCGTGCGGCCCGAGGACCTGCGCGGGCGGGTGGAACTGGAC
CACGTGTCCTTCCGCTACGACCCCGAGAAGCCGCTGATCGAGGACCTGTCGCTGAAGGTGGAGCCGGGCCACACGGTCGC
CATCGTCGGCCCGACCGGGGCCGGCAAGACGACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCTCCGGCGGCCGGA
TCACCCTGGACGGCGTCGACATCGCGAAGATGTCCCGGGACGAGCTGCGGGCCGGCATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCCTCGCGGGAGGTCACCCGCGGGGAGATCGAGGAGGC
CGCGCGGGCCGCGCACGCCGACCGGTTCGTCCGGACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACGG
GGGTGAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAG
GCGACGTCGTCCGTGGACACGCGCACGGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATTCTGGTGATGGAGGACGGGGCGATCGTGGAGCAGG
GGGCGCACACGGAGCTGCTGGCCGCGGACGGCGCGTACGCGCGTCTGTACAAGGCTCAGTTCGCGGAGGCGGTGGCCGAG
GTGGGGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.055

97.04

0.408