Detailed information NTG0344913

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GEV49_RS22535
• Genome accession: NZ_CP045547
• Coordinates: 5064178..5065176 (+)
• Length: 332 a.a.
• NCBI ID: WP_153179391.1
• Uniprot ID: -
• Organism: Streptomyces sp. SYP-A7193
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5059178..5070176

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GEV49_RS22510 (GEV49_22720)	-	5059514..5060167 (+)	654	WP_153179388.1	TetR/AcrR family transcriptional regulator	-
GEV49_RS22515 (GEV49_22725)	-	5060326..5061870 (+)	1545	WP_153179389.1	MFS transporter	-
GEV49_RS22520 (GEV49_22730)	-	5062009..5062500 (-)	492	WP_007388762.1	MarR family winged helix-turn-helix transcriptional regulator	-
GEV49_RS22525 (GEV49_22735)	-	5062623..5063384 (+)	762	WP_153181916.1	dioxygenase	-
GEV49_RS22530 (GEV49_22740)	-	5063434..5063952 (-)	519	WP_153179390.1	GNAT family N-acetyltransferase	-
GEV49_RS22535 (GEV49_22745)	rpoS	5064178..5065176 (+)	999	WP_153179391.1	sigma-70 family RNA polymerase sigma factor	Regulator
GEV49_RS22540 (GEV49_22750)	-	5065636..5066331 (+)	696	WP_153179392.1	TetR/AcrR family transcriptional regulator	-
GEV49_RS22545 (GEV49_22755)	-	5066457..5067428 (-)	972	WP_153179393.1	helix-turn-helix transcriptional regulator	-
GEV49_RS22550 (GEV49_22760)	-	5067491..5069056 (+)	1566	WP_153179394.1	MFS transporter	-
GEV49_RS22555 (GEV49_22765)	-	5069281..5070042 (+)	762	WP_153179395.1	DeoR/GlpR family DNA-binding transcription regulator	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37066.77 Da
• Isoelectric Point: 4.9705

>NTDB_id=344913 GEV49_RS22535 WP_153179391.1 5064178..5065176(+) (rpoS) [Streptomyces sp. SYP-A7193]
MATRAVARRKSATGETSGSATSVRANGGELADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGCAETGAD
ATREELQALIDESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPAEIAAELGSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide

• Length: 999 bp

>NTDB_id=344913 GEV49_RS22535 WP_153179391.1 5064178..5065176(+) (rpoS) [Streptomyces sp. SYP-A7193]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGGCTCGGCAACCAGCGTCCGCGCGAACGG
CGGCGAGCTCGCCGACCGCGATCTGGTCGGCATGTACCTCGACGAGATCGCCCGGACACCGCTGCTCGACGCCGCCAAGG
AGGTCGAGCTGTCCCAGACCATCGAGGCGGGTGTGTTCGCGCGGCAGGTCCTCGAAGGCTGCGCGGAGACCGGGGCGGAC
GCCACCCGCGAGGAGCTCCAGGCCCTGATCGACGAGAGCGAGCGGGCGAAGGACGTCTTCATCCGCTCCAACCTCCGCCT
GGTCGTCGCCGTCGCCCGCCGCTACCCGCGCAGCGGCCTGCCGCTCCTTGACCTGATCCAGGAGGGCAACGCCGGCCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACGCGCTCCATCGCCGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGGCGCGT
GCAGCGCGAGTTCAACCGCGAGCACGGGCGCGAGCCGGAGCCCGCCGAGATCGCGGCCGAGCTGGGCTCGACCCCGGAGC
GCGTCACCGACGTGCTCGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTGCTCGAGGACACCTCGGCCGTGTCCCCCGAGCAGTCGGTGCTGACCCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGCCGCCTCGACCCGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACGC
TGACCGAGGTCGGCAAGGAGCACGGTCTCACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAG
AAGCTGGCCCGCGACACCGGCTTCGAGGCGGCCGCGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (269-321)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70 region 3 (Sigma70_r3) (179-255)

• Sigma-70 region 2 (Sigma70_r2) (100-169)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.468	90.06	0.364