Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   GEV49_RS11225 Genome accession   NZ_CP045547
Coordinates   2607991..2610210 (-) Length   739 a.a.
NCBI ID   WP_153177769.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7193     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2602991..2615210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV49_RS11195 (GEV49_11255) rnc 2603772..2604602 (-) 831 WP_003973423.1 ribonuclease III -
  GEV49_RS11200 (GEV49_11260) rpmF 2604610..2604783 (-) 174 WP_006139588.1 50S ribosomal protein L32 -
  GEV49_RS11205 (GEV49_11265) - 2604786..2605439 (-) 654 WP_153177766.1 YceD family protein -
  GEV49_RS11210 (GEV49_11270) - 2605581..2606720 (-) 1140 WP_153177767.1 cell division initiation protein -
  GEV49_RS11215 (GEV49_11275) coaD 2606842..2607321 (-) 480 WP_042825260.1 pantetheine-phosphate adenylyltransferase -
  GEV49_RS11220 (GEV49_11280) rsmD 2607348..2607935 (-) 588 WP_153177768.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GEV49_RS11225 (GEV49_11285) recG 2607991..2610210 (-) 2220 WP_153177769.1 ATP-dependent DNA helicase RecG Machinery gene
  GEV49_RS11230 (GEV49_11290) - 2610283..2612031 (-) 1749 WP_153177770.1 DAK2 domain-containing protein -
  GEV49_RS11235 (GEV49_11295) rpmB 2612298..2612483 (+) 186 WP_003993230.1 50S ribosomal protein L28 -
  GEV49_RS11240 (GEV49_11300) thiD 2612609..2613406 (-) 798 WP_153177771.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  GEV49_RS11245 (GEV49_11305) - 2613403..2614371 (-) 969 WP_153177772.1 thiamine-phosphate kinase -
  GEV49_RS11250 (GEV49_11310) - 2614617..2614850 (+) 234 WP_003973433.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 739 a.a.        Molecular weight: 80043.66 Da        Isoelectric Point: 6.4844

>NTDB_id=344880 GEV49_RS11225 WP_153177769.1 2607991..2610210(-) (recG) [Streptomyces sp. SYP-A7193]
MDLVPALREPLKKVLGPATAKVMAEHLGLHTVGDLLHHYPRRYEERGQLTHLADLPMDEHVTVVAQVADARLHTFASSKA
PRGKGQRLEVTITDGSGRLQLVFFGHGVHKPHKELLPGTRAMFAGKVSVFNRRLQLAHPAYELLRGDVEGEETVESWAGA
LIPLYPATAKLESWKLAKAIQTVLPSAQEAVDPLPATLREGRGLVSLPEALLKIHRPHTKADIEDARARLKWDEAFVLQI
ALARRRHAETQLPAVPRKPSPDGLLTAFDDRLPFTLTDGQQKVSREIFDDLATDHPMHRLLQGEVGSGKTLVALRAMLAV
VDSGGQAVMLAPTEVLAQQHHRSVVEMMGELAEGGMLGGAEHATKVVLLTGSMGAAARRHALLDLATGEAGIVIGTHALI
EDKVQFHDLGLVVVDEQHRFGVEQRDALRGKGKQPPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASHVVPA
ADKPHFLARAWERVREEVSNGHQAYVVCPRIGDEDDDPRKGAKQSKQPPEGDADKRPPLAVLDVAEGLAKGPLQGLKVEV
LHGRMQPDDKDAVMRRFAAGEADVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEMPE
ASAARQRLNAVASTRDGFELSRIDLEQRREGDVLGQAQSGARTSLRVLAVIEDEEIIAEARQEAAAVVAADPELTGLPGL
RTALEALLDDEREQYLEKG

Nucleotide


Download         Length: 2220 bp        

>NTDB_id=344880 GEV49_RS11225 WP_153177769.1 2607991..2610210(-) (recG) [Streptomyces sp. SYP-A7193]
ATGGATCTCGTGCCCGCACTGCGAGAACCCCTGAAGAAGGTGCTCGGCCCCGCCACCGCGAAGGTGATGGCCGAGCACCT
CGGCCTGCACACCGTCGGCGACCTCCTCCACCACTATCCCCGCAGATACGAGGAGCGCGGCCAGCTCACCCACCTCGCCG
ACCTGCCCATGGACGAGCACGTCACCGTGGTCGCCCAGGTCGCCGACGCCCGGCTGCACACCTTCGCCTCGTCGAAGGCC
CCGCGCGGCAAGGGGCAGCGCCTCGAGGTGACCATCACGGACGGCAGCGGCCGACTCCAACTGGTCTTCTTCGGCCACGG
AGTCCACAAGCCCCACAAGGAACTCCTGCCGGGCACCCGCGCGATGTTCGCGGGCAAGGTCTCCGTTTTCAACCGCCGAC
TGCAACTGGCCCATCCGGCGTACGAATTGCTGCGCGGCGACGTGGAGGGCGAGGAGACCGTCGAGTCCTGGGCGGGTGCC
CTCATCCCCCTCTACCCGGCCACCGCCAAGCTGGAGTCCTGGAAGCTCGCCAAGGCGATCCAGACGGTGCTGCCCAGCGC
CCAGGAGGCCGTCGACCCGCTCCCCGCCACGCTGCGCGAGGGCCGGGGCCTGGTCTCCCTGCCCGAGGCCCTCCTCAAGA
TCCACCGCCCGCACACCAAGGCCGACATCGAGGACGCCCGCGCCCGCCTGAAGTGGGACGAGGCCTTCGTCCTCCAGATC
GCCCTCGCCCGCCGCCGCCACGCCGAGACCCAGCTCCCCGCCGTCCCCAGGAAGCCCAGCCCCGACGGCCTGCTCACCGC
CTTCGACGACCGGCTCCCCTTCACCCTCACCGACGGCCAGCAGAAGGTCTCCCGGGAGATCTTCGACGACCTCGCCACCG
ACCACCCCATGCACCGGCTGCTCCAGGGCGAGGTGGGCAGCGGCAAGACCCTGGTCGCCCTGCGCGCCATGCTCGCCGTC
GTCGACTCCGGCGGGCAGGCCGTGATGCTGGCGCCCACCGAGGTGCTCGCCCAGCAGCACCACCGGTCGGTCGTCGAGAT
GATGGGCGAGCTGGCCGAGGGAGGGATGCTGGGCGGCGCCGAGCACGCCACCAAGGTGGTGCTGCTCACCGGCTCCATGG
GCGCCGCCGCCCGCCGCCACGCCCTGCTCGACCTGGCCACCGGTGAGGCGGGCATCGTCATCGGCACACACGCGCTGATC
GAGGACAAGGTCCAGTTCCACGACCTCGGCCTGGTCGTCGTCGACGAGCAGCACCGCTTCGGCGTGGAGCAGCGCGACGC
CCTGCGCGGCAAGGGCAAGCAGCCCCCGCACCTGCTCGTCATGACCGCCACGCCCATCCCGCGCACCGTCGCCATGACCG
TCTTCGGCGACCTGGAGACCTCCGTCCTCGACCAGCTGCCGGCCGGCCGGTCCCCGATCGCCAGCCACGTCGTCCCGGCC
GCGGACAAACCCCACTTCCTCGCCCGCGCCTGGGAACGGGTCCGCGAGGAGGTGTCGAACGGCCACCAGGCGTACGTCGT
CTGCCCCCGCATCGGCGACGAGGACGACGACCCCAGGAAGGGCGCCAAGCAGTCCAAGCAGCCCCCGGAGGGCGACGCCG
ACAAGCGCCCCCCGCTCGCCGTCCTCGACGTCGCCGAGGGCCTCGCCAAGGGCCCGCTCCAGGGGCTCAAGGTGGAGGTC
CTGCACGGCAGGATGCAGCCCGACGACAAGGACGCGGTCATGCGCCGCTTCGCCGCCGGGGAGGCCGACGTCCTGGTCGC
CACCACCGTCATCGAGGTCGGCGTCAACGTGCCCAACGCCACCGCGATGGTGATCATGGACGCCGACCGCTTCGGCGTCT
CCCAGCTCCACCAGCTGCGCGGTCGTGTCGGCCGTGGTTCCGCCCCCGGCCTGTGCCTGCTGGTCAGCGAGATGCCCGAG
GCGAGCGCGGCCCGGCAGCGGCTGAACGCGGTCGCGAGCACCCGCGACGGCTTCGAGCTCTCCCGCATCGACCTCGAACA
GCGCCGCGAGGGCGACGTCCTCGGCCAGGCCCAGTCCGGCGCCCGCACCTCCCTGCGCGTCCTCGCCGTCATCGAGGACG
AGGAGATCATCGCCGAGGCGAGACAGGAGGCGGCCGCCGTCGTCGCCGCCGACCCGGAGCTGACCGGCCTGCCCGGGCTG
CGCACGGCCCTGGAGGCACTGCTGGACGACGAGCGGGAGCAGTACCTGGAGAAGGGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(554-626)

DEAD/DEAH box helicase (DEAD)

(297-450)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(654-715)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.589

97.835

0.378