Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   FPL20_RS19730 Genome accession   NZ_CP045478
Coordinates   3737054..3737632 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   P40396
Organism   Bacillus subtilis strain JD-014     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3732054..3742632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL20_RS19695 (FPL20_GE03766) lepB 3732060..3732566 (-) 507 WP_003233128.1 signal peptidase I -
  FPL20_RS19700 (FPL20_GE03767) yhjE 3732568..3733191 (-) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  FPL20_RS19705 (FPL20_GE03768) - 3733343..3733705 (+) 363 WP_003233132.1 hypothetical protein -
  FPL20_RS19710 (FPL20_GE03769) yhjC 3733913..3734113 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  FPL20_RS19715 (FPL20_GE03770) yhjB 3734110..3735579 (+) 1470 WP_003233134.1 sodium:solute symporter -
  FPL20_RS19720 (FPL20_GE03771) yhjA 3735622..3735891 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  FPL20_RS19725 (FPL20_GE03772) yhxD 3736108..3737007 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  FPL20_RS19730 (FPL20_GE03773) comK 3737054..3737632 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  FPL20_RS19735 (FPL20_GE03774) yhzC 3737925..3738158 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  FPL20_RS19740 (FPL20_GE03775) yhxC 3738186..3739043 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  FPL20_RS19745 (FPL20_GE03776) comW 3739155..3740684 (+) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  FPL20_RS22700 - 3740739..3741365 (+) 627 Protein_3857 protoglobin domain-containing protein -
  FPL20_RS22705 - 3741606..3742121 (+) 516 WP_326255844.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=344772 FPL20_RS19730 WP_003245329.1 3737054..3737632(-) (comK) [Bacillus subtilis strain JD-014]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=344772 FPL20_RS19730 WP_003245329.1 3737054..3737632(-) (comK) [Bacillus subtilis strain JD-014]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterProScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P40396

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1