Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   NT05HA_RS06130 Genome accession   NC_012913
Coordinates   1353635..1354156 (-) Length   173 a.a.
NCBI ID   WP_005701128.1    Uniprot ID   A0A3S4RIZ1
Organism   Aggregatibacter aphrophilus NJ8700     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348635..1359156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT05HA_RS06115 (NT05HA_1335) comQ 1351936..1352238 (-) 303 WP_005701125.1 DUF5374 domain-containing protein Machinery gene
  NT05HA_RS06120 (NT05HA_1336) - 1352222..1352908 (-) 687 WP_005701126.1 DUF2572 family protein -
  NT05HA_RS06125 (NT05HA_1337) - 1352905..1353648 (-) 744 WP_032996284.1 PulJ/GspJ family protein -
  NT05HA_RS06130 (NT05HA_1338) comN 1353635..1354156 (-) 522 WP_005701128.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NT05HA_RS06150 (NT05HA_1342) pal 1354902..1355366 (-) 465 WP_005701129.1 peptidoglycan-associated lipoprotein Pal -
  NT05HA_RS06155 (NT05HA_1343) tolB 1355381..1356625 (-) 1245 WP_390882880.1 Tol-Pal system beta propeller repeat protein TolB -
  NT05HA_RS06160 (NT05HA_1344) tolA 1356697..1357948 (-) 1252 Protein_1205 cell envelope integrity protein TolA -
  NT05HA_RS06165 (NT05HA_1346) tolR 1357967..1358389 (-) 423 WP_005701133.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20245.35 Da        Isoelectric Point: 8.2465

>NTDB_id=34467 NT05HA_RS06130 WP_005701128.1 1353635..1354156(-) (comN) [Aggregatibacter aphrophilus NJ8700]
MQKGFTLLEILIALLIISVLLTLSLPAWQQHRQQNILQKEQQKLYIFLRQIQARVENSSDIWFLIANRHQMTQRWCLTAQ
IKSDKLCDCLNPQHCPQEVSAHFYYPTFEDTILISKRYYPFEFTRLSGIRNTASTACFVLQANHQRTLFSFFNVGSLKLK
DNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=34467 NT05HA_RS06130 WP_005701128.1 1353635..1354156(-) (comN) [Aggregatibacter aphrophilus NJ8700]
ATGCAAAAGGGATTTACCCTGTTAGAAATCTTAATCGCCCTGCTGATAATAAGTGTATTGCTCACATTGTCGCTTCCCGC
ATGGCAGCAGCATCGTCAGCAAAATATTTTGCAGAAAGAACAACAAAAGCTGTATATCTTTTTGCGTCAAATTCAGGCTA
GAGTGGAAAATTCATCCGACATTTGGTTTTTAATTGCGAATCGCCATCAAATGACGCAACGTTGGTGCCTCACTGCTCAA
ATTAAGAGTGACAAATTATGTGATTGCCTCAACCCGCAGCATTGCCCGCAAGAGGTTTCCGCACATTTTTACTATCCTAC
ATTTGAAGACACCATATTAATCAGCAAGCGTTACTATCCTTTTGAATTTACCCGTTTGAGTGGTATTCGGAACACGGCGT
CAACAGCCTGTTTTGTGTTACAAGCGAATCATCAACGAACCCTATTTTCATTTTTTAATGTGGGTAGTTTGAAGTTAAAA
GATAACCAATCCTTAAGCGCCTGTGTTAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S4RIZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578

Multiple sequence alignment