Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   NT05HA_RS06115 Genome accession   NC_012913
Coordinates   1351936..1352238 (-) Length   100 a.a.
NCBI ID   WP_005701125.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus NJ8700     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1346936..1357238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT05HA_RS06100 (NT05HA_1332) - 1347622..1348062 (+) 441 WP_005701122.1 DNA polymerase III subunit psi -
  NT05HA_RS06105 (NT05HA_1333) rimI 1348075..1348518 (+) 444 WP_005701123.1 ribosomal protein S18-alanine N-acetyltransferase -
  NT05HA_RS06110 (NT05HA_1334) recC 1348521..1351898 (-) 3378 WP_012771679.1 exodeoxyribonuclease V subunit gamma -
  NT05HA_RS06115 (NT05HA_1335) comQ 1351936..1352238 (-) 303 WP_005701125.1 DUF5374 domain-containing protein Machinery gene
  NT05HA_RS06120 (NT05HA_1336) - 1352222..1352908 (-) 687 WP_005701126.1 DUF2572 family protein -
  NT05HA_RS06125 (NT05HA_1337) - 1352905..1353648 (-) 744 WP_032996284.1 PulJ/GspJ family protein -
  NT05HA_RS06130 (NT05HA_1338) comN 1353635..1354156 (-) 522 WP_005701128.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NT05HA_RS06150 (NT05HA_1342) pal 1354902..1355366 (-) 465 WP_005701129.1 peptidoglycan-associated lipoprotein Pal -
  NT05HA_RS06155 (NT05HA_1343) tolB 1355381..1356625 (-) 1245 WP_390882880.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 11683.55 Da        Isoelectric Point: 10.7466

>NTDB_id=34466 NT05HA_RS06115 WP_005701125.1 1351936..1352238(-) (comQ) [Aggregatibacter aphrophilus NJ8700]
MISRLNFIRQKGMSLLSLLVALSLFSGIFLTFNQWGNAQRKSAVEIYQRFQGIQIAENQRQRQFLGLSCESEIYQNHIRF
QVVCRQNQVTVKYPRGEISL

Nucleotide


Download         Length: 303 bp        

>NTDB_id=34466 NT05HA_RS06115 WP_005701125.1 1351936..1352238(-) (comQ) [Aggregatibacter aphrophilus NJ8700]
ATGATTTCACGCCTTAATTTTATTCGACAGAAAGGCATGAGCTTGCTGTCGTTGTTGGTGGCATTAAGTTTATTTAGCGG
CATTTTTCTCACGTTTAACCAATGGGGTAATGCACAACGTAAAAGTGCGGTGGAAATTTACCAACGTTTTCAAGGAATCC
AAATTGCCGAAAATCAACGGCAACGCCAGTTTCTTGGTTTGTCTTGTGAAAGTGAGATTTACCAAAATCATATTCGTTTT
CAGGTGGTTTGTCGGCAAAATCAGGTAACGGTGAAATATCCTCGCGGTGAAATTAGTTTATAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(61-100)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

55.319

94

0.52

Multiple sequence alignment