Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   FPL20_RS03045 Genome accession   NZ_CP045478
Coordinates   578819..579049 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain JD-014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 573819..584049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL20_RS03035 (FPL20_GE00554) spoVT 574544..575080 (-) 537 WP_003218365.1 stage V sporulation protein T -
  FPL20_RS03040 (FPL20_GE00555) mfd 575216..578749 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  FPL20_RS03045 (FPL20_GE00556) subA/fin 578819..579049 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  FPL20_RS03050 (FPL20_GE00557) pth 579109..579675 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  FPL20_RS03055 (FPL20_GE00558) rplYB 579782..580396 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  FPL20_RS03060 (FPL20_GE00559) prsS 580481..581434 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  FPL20_RS03065 (FPL20_GE00560) glmU 581457..582827 (-) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  FPL20_RS03070 (FPL20_GE00561) spoVG 583020..583313 (-) 294 WP_003218346.1 septation regulator SpoVG -
  FPL20_RS03075 (FPL20_GE00562) ridA 583507..583884 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=344653 FPL20_RS03045 WP_003243417.1 578819..579049(-) (subA/fin) [Bacillus subtilis strain JD-014]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=344653 FPL20_RS03045 WP_003243417.1 578819..579049(-) (subA/fin) [Bacillus subtilis strain JD-014]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment