Detailed information
Bioinformatically predicted
Overview
| Name | pilL-C | Type | Machinery gene |
| Locus tag | HJ37_RS04325 | Genome accession | NC_016445 |
| Coordinates | 963430..963810 (-) | Length | 126 a.a. |
| NCBI ID | WP_000045526.1 | Uniprot ID | Q6BBL2 |
| Organism | Vibrio cholerae O1 str. 2010EL-1786 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 958430..968810
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HJ37_RS04305 (Vch1786_I0891) | - | 958596..960002 (+) | 1407 | WP_000545341.1 | MDR family MFS transporter | - |
| HJ37_RS04310 (Vch1786_I0892) | - | 960158..961672 (+) | 1515 | WP_000411504.1 | cryptochrome/deoxyribodipyrimidine photo-lyase family protein | - |
| HJ37_RS04315 (Vch1786_I0893) | - | 961818..962132 (+) | 315 | WP_000312387.1 | multidrug efflux SMR transporter | - |
| HJ37_RS04320 (Vch1786_I0894) | - | 962187..963422 (-) | 1236 | WP_000621946.1 | methyl-accepting chemotaxis protein | - |
| HJ37_RS04325 (Vch1786_I0895) | pilL-C | 963430..963810 (-) | 381 | WP_000045526.1 | response regulator | Machinery gene |
| HJ37_RS04330 (Vch1786_I0896) | - | 963803..964063 (-) | 261 | WP_001143862.1 | hypothetical protein | - |
| HJ37_RS04335 (Vch1786_I0897) | - | 964053..966326 (-) | 2274 | WP_001178898.1 | chemotaxis protein CheA | - |
| HJ37_RS04340 (Vch1786_I0898) | - | 966335..966706 (-) | 372 | WP_000757478.1 | PleD family two-component system response regulator | - |
| HJ37_RS04345 (Vch1786_I0899) | - | 966706..967551 (-) | 846 | WP_001002907.1 | protein-glutamate O-methyltransferase CheR | - |
| HJ37_RS04350 (Vch1786_I0900) | - | 967562..968218 (-) | 657 | WP_000974695.1 | HEAT repeat domain-containing protein | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13674.04 Da Isoelectric Point: 9.8959
>NTDB_id=34440 HJ37_RS04325 WP_000045526.1 963430..963810(-) (pilL-C) [Vibrio cholerae O1 str. 2010EL-1786]
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
MSKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMDGIELISKIRAIASYRFTPI
LVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVLPGSIS
Nucleotide
Download Length: 381 bp
>NTDB_id=34440 HJ37_RS04325 WP_000045526.1 963430..963810(-) (pilL-C) [Vibrio cholerae O1 str. 2010EL-1786]
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
ATGTCTAAAAGCATTCTGATTGTTGATGACTCTAGTACTGTTCTTATGAGTGTCGATGCCATGCTCTCTAAACTGGGTTT
CCAAGTCGAGAAAGCAAAAGATGGCGTTGAAGCAGAAACTCGACTCAAAGGTGGTCTAAAAGTCAACCTCATCATTACCG
ACATCAATATGCCTCGTATGGATGGTATTGAGTTGATTAGCAAAATTCGTGCGATTGCTTCATATCGCTTTACCCCAATT
TTAGTGCTCACTACAGAACAAGAACAAGCCAAACGCAATGAGGCTCGCGCCAAAGGTGCAACAGGTTATTTAGTTAAGCC
CGTAACGGGAGATCAATTGAAAGCCGTGATTCAACAAGTTCTCCCAGGTAGTATTTCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilL-C | Synechocystis sp. PCC 6803 |
39.2 |
99.206 |
0.389 |