Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   GCU76_RS23015 Genome accession   NZ_CP045425
Coordinates   579999..580139 (-) Length   46 a.a.
NCBI ID   WP_250622513.1    Uniprot ID   -
Organism   Bacillus subtilis strain JAAA     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 574999..585139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS03020 pleJ 575045..577216 (+) 2172 WP_017695975.1 MMPL family transporter -
  GCU76_RS03025 ydfK 577274..577963 (-) 690 WP_152425373.1 DUF554 domain-containing protein -
  GCU76_RS03030 ydfL 578053..578865 (-) 813 WP_003234177.1 MerR family transcriptional regulator -
  GCU76_RS23010 - 579428..579751 (-) 324 WP_017695977.1 hypothetical protein -
  GCU76_RS23015 rapF 579999..580139 (-) 141 WP_250622513.1 hypothetical protein Regulator
  GCU76_RS03040 - 580581..581306 (+) 726 WP_017695978.1 hypothetical protein -
  GCU76_RS03045 - 581572..582813 (-) 1242 Protein_547 IS1182 family transposase -
  GCU76_RS03050 mneP 582940..583833 (-) 894 WP_152425374.1 manganese transporter MneP -
  GCU76_RS03055 ydfN 584310..584930 (+) 621 WP_144453512.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5737.56 Da        Isoelectric Point: 4.5164

>NTDB_id=344281 GCU76_RS23015 WP_250622513.1 579999..580139(-) (rapF) [Bacillus subtilis strain JAAA]
MRDEVKEEIELMKENQDAVVYYQLLKFRHELMLDYLHPDNVRDIEK

Nucleotide


Download         Length: 141 bp        

>NTDB_id=344281 GCU76_RS23015 WP_250622513.1 579999..580139(-) (rapF) [Bacillus subtilis strain JAAA]
ATGAGGGATGAAGTTAAGGAAGAAATCGAGCTAATGAAGGAAAACCAAGACGCCGTCGTTTACTACCAACTATTAAAATT
CCGTCATGAATTAATGTTGGACTATCTCCATCCTGACAATGTCAGAGATATTGAAAAATAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(1-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

52.632

82.609

0.435
  rapC Bacillus subtilis subsp. subtilis str. 168

40

97.826

0.391

Multiple sequence alignment