Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   GCU76_RS14040 Genome accession   NZ_CP045425
Coordinates   2580093..2581226 (-) Length   377 a.a.
NCBI ID   WP_029318105.1    Uniprot ID   -
Organism   Bacillus subtilis strain JAAA     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2575093..2586226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS14015 - 2576348..2576581 (+) 234 Protein_2696 helix-turn-helix domain-containing protein -
  GCU76_RS14020 arsC 2576792..2577211 (-) 420 WP_152425522.1 arsenate reductase (thioredoxin) -
  GCU76_RS14025 acr3 2577223..2578263 (-) 1041 WP_004398718.1 arsenite efflux transporter Acr3 -
  GCU76_RS14030 arsK 2578286..2578726 (-) 441 WP_152425523.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  GCU76_RS14035 arsR 2578787..2579104 (-) 318 WP_004399122.1 arsenical resistance operon transcriptional regulator ArsR -
  GCU76_RS22890 - 2579945..2580103 (-) 159 WP_162830452.1 hypothetical protein -
  GCU76_RS14040 rapC 2580093..2581226 (-) 1134 WP_029318105.1 tetratricopeptide repeat protein Regulator
  GCU76_RS14045 phrE 2581637..2581771 (+) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  GCU76_RS14050 - 2581882..2582041 (+) 160 Protein_2704 hypothetical protein -
  GCU76_RS14055 yqcG 2582411..2584006 (+) 1596 WP_152425524.1 LXG family T7SS effector endonuclease toxin YqcG -
  GCU76_RS14060 yqcF 2584021..2584599 (+) 579 WP_015714310.1 type VII secretion system immunity protein YqcF -
  GCU76_RS14065 - 2584717..2584863 (+) 147 WP_152425525.1 hypothetical protein -
  GCU76_RS14070 - 2584889..2586136 (-) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 44544.89 Da        Isoelectric Point: 5.4626

>NTDB_id=344235 GCU76_RS14040 WP_029318105.1 2580093..2581226(-) (rapC) [Bacillus subtilis strain JAAA]
MNPVLPSSHVGVKITEWYKMIRQFSVPDAEILKAEVEREIKQMEEDEYLLIYYSLMSFRHQLMLDYLEPEKKYRTARPTI
SELLEKIEAPQKKLTGLLKYYSLFFRGMYEFDQQEFVEAINYYRKAEKELYAVTDEIEQAEFHFKVAEAYYNMKQTHVSM
HHILKALEIYDQNPLYTVRKIQSLFVIVGNYLDFKHYEKGLKHLEEALKLSKELGHDRLISSALYNLGECYHYMGQPSKA
EGYLKEAAEVAEKANLRTLPHTLHSLATVLFKQEKFNEGQKVLHQGIETAQKFNDELFLSMNKFLNALYIESVDKQGILN
ILNDLNESHMFSFTEHITLLTAEYYREGGEFEESSFFYDKMVEAQLQIQRGDCLYEY

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=344235 GCU76_RS14040 WP_029318105.1 2580093..2581226(-) (rapC) [Bacillus subtilis strain JAAA]
GTGAATCCGGTTTTACCTTCCTCACATGTAGGGGTTAAGATTACCGAATGGTATAAGATGATACGTCAGTTTAGTGTTCC
GGATGCTGAAATTTTAAAAGCAGAAGTTGAAAGAGAAATCAAACAGATGGAAGAGGATGAGTACTTACTAATTTATTACT
CCCTCATGAGCTTTCGACACCAACTTATGCTCGACTACTTAGAGCCAGAAAAAAAGTATAGAACAGCACGTCCAACCATC
TCAGAATTACTTGAAAAAATTGAAGCTCCCCAAAAGAAATTAACCGGTCTCCTGAAATATTACTCATTATTTTTCCGTGG
TATGTATGAATTCGATCAGCAAGAATTCGTCGAAGCTATTAATTATTACCGTAAAGCTGAAAAAGAACTTTATGCTGTTA
CTGATGAAATCGAACAAGCTGAATTTCATTTTAAAGTAGCAGAAGCTTATTACAACATGAAACAAACTCACGTTTCCATG
CACCACATTTTAAAGGCATTGGAGATTTATGATCAGAATCCACTGTATACTGTAAGGAAAATTCAAAGCTTGTTTGTAAT
CGTTGGTAACTATCTTGATTTTAAACATTATGAAAAAGGATTGAAACATCTTGAAGAAGCTCTGAAACTTTCTAAAGAAT
TGGGCCACGACAGACTAATAAGTTCGGCTCTTTATAATTTAGGCGAATGTTATCATTACATGGGACAACCAAGTAAAGCT
GAGGGATATTTGAAAGAAGCAGCTGAAGTTGCAGAAAAAGCAAATTTAAGGACACTTCCTCATACGCTTCATTCGTTGGC
CACAGTTTTATTCAAGCAAGAAAAGTTTAATGAAGGACAGAAGGTTTTGCATCAAGGGATCGAAACAGCACAAAAATTTA
ATGACGAACTTTTCTTATCGATGAATAAGTTTCTGAATGCTTTATATATTGAGTCAGTTGATAAACAGGGTATCCTTAAT
ATATTGAATGATCTTAATGAAAGTCACATGTTCTCTTTTACGGAACACATAACGTTGCTTACTGCAGAATATTATAGAGA
AGGCGGAGAATTTGAAGAATCCAGTTTTTTCTACGATAAAATGGTTGAAGCGCAGCTTCAAATTCAGCGAGGTGACTGTT
TATATGAGTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(197-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

43.467

99.469

0.432
  rapF Bacillus subtilis subsp. subtilis str. 168

40.212

100

0.403