Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   HJ37_RS00695 Genome accession   NC_016445
Coordinates   162913..163410 (+) Length   165 a.a.
NCBI ID   WP_000797297.1    Uniprot ID   G9IDC2
Organism   Vibrio cholerae O1 str. 2010EL-1786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 157913..168410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJ37_RS00675 (Vch1786_I0136) - 158782..159549 (+) 768 WP_000970189.1 hypothetical protein -
  HJ37_RS00680 (Vch1786_I0137) - 159648..160601 (+) 954 WP_000027441.1 DUF3150 domain-containing protein -
  HJ37_RS00685 (Vch1786_I0138) - 160663..161103 (+) 441 WP_001192023.1 hypothetical protein -
  HJ37_RS00690 (Vch1786_I0139) - 161173..162828 (+) 1656 WP_001016320.1 nitric oxide reductase activation protein NorD -
  HJ37_RS00695 (Vch1786_I0140) radC 162913..163410 (+) 498 WP_000797297.1 DNA repair protein RadC Machinery gene
  HJ37_RS00700 (Vch1786_I0141) - 163410..163751 (+) 342 WP_001081787.1 hypothetical protein -
  HJ37_RS00705 (Vch1786_I0142) - 163842..164915 (+) 1074 WP_001207590.1 primase-helicase zinc-binding domain-containing protein -
  HJ37_RS00710 (Vch1786_I0143) - 165005..165712 (+) 708 WP_000989526.1 hypothetical protein -
  HJ37_RS18975 (Vch1786_I0144) - 166005..166388 (+) 384 WP_223225475.1 VOC family protein -
  HJ37_RS00720 (Vch1786_I0145) - 166385..167086 (-) 702 WP_001901434.1 AraC family transcriptional regulator -
  HJ37_RS00725 (Vch1786_I0146) - 167186..167482 (-) 297 WP_001919795.1 DUF1801 domain-containing protein -
  HJ37_RS00730 (Vch1786_I0147) - 167619..168029 (-) 411 WP_000592337.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18510.16 Da        Isoelectric Point: 6.6092

>NTDB_id=34420 HJ37_RS00695 WP_000797297.1 162913..163410(+) (radC) [Vibrio cholerae O1 str. 2010EL-1786]
MKNRKFLAGEDAGTYIVPEQVTEADILDLALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLDTKHRVIRF
EELFKGTLDAASVYPREVTKRALELNAAAVILVHNHPSGDPEPSEADKRITHRLRDALSLVDIRTLDHVVVASEGCVSLA
ERGYL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=34420 HJ37_RS00695 WP_000797297.1 162913..163410(+) (radC) [Vibrio cholerae O1 str. 2010EL-1786]
ATGAAAAACAGAAAGTTCTTAGCTGGCGAAGATGCCGGTACTTATATCGTTCCTGAGCAAGTGACTGAAGCGGATATCTT
AGATCTGGCGCTTAAGCTTGCCCGTGGTCGATTAAGTAAAGGTCGCAAAATTGAACAGCCATCGTCGGCGTTCTCATACC
TGCAAACACTGATGCACGAGTATGAGCACGAGGTTTTTGGTGTGCTGTTTCTTGATACAAAGCATCGCGTCATTCGATTT
GAAGAGCTGTTCAAAGGCACTTTAGATGCGGCGAGCGTGTATCCAAGGGAAGTAACAAAACGAGCGCTAGAACTTAATGC
GGCAGCAGTGATACTGGTTCATAACCATCCATCGGGTGATCCTGAACCCAGTGAAGCTGATAAACGCATTACTCATCGAC
TTCGTGACGCCTTGTCACTTGTTGATATTCGAACGCTTGACCATGTCGTGGTCGCATCCGAGGGCTGCGTTTCGCTTGCC
GAACGCGGTTATCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9IDC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50

73.939

0.37

Multiple sequence alignment