Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   EWS90_RS08620 Genome accession   NZ_CP035739
Coordinates   1784888..1785523 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 1334/14     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1779888..1790523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWS90_RS08590 (EWS90_08590) murB 1780986..1782005 (-) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -
  EWS90_RS08595 (EWS90_08595) - 1782002..1782466 (-) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  EWS90_RS08600 (EWS90_08600) kdsB 1782466..1783230 (-) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EWS90_RS08605 (EWS90_08605) - 1783230..1783415 (-) 186 WP_003091157.1 Trm112 family protein -
  EWS90_RS08610 (EWS90_08610) lpxK 1783453..1784451 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  EWS90_RS08615 (EWS90_08615) - 1784451..1784891 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  EWS90_RS08620 (EWS90_08620) exbB 1784888..1785523 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EWS90_RS08625 (EWS90_08625) comA 1785596..1787821 (-) 2226 WP_116151355.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EWS90_RS08630 (EWS90_08630) - 1787952..1788485 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  EWS90_RS08635 (EWS90_08635) - 1788573..1789817 (-) 1245 WP_057386134.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=344172 EWS90_RS08620 WP_003091163.1 1784888..1785523(-) (exbB) [Pseudomonas aeruginosa strain 1334/14]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=344172 EWS90_RS08620 WP_003091163.1 1784888..1785523(-) (exbB) [Pseudomonas aeruginosa strain 1334/14]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment