Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   GCU76_RS00330 Genome accession   NZ_CP045425
Coordinates   59699..59929 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain JAAA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54699..64929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS00300 ridA 54863..55240 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  GCU76_RS00305 spoVG 55435..55728 (+) 294 WP_003218346.1 septation regulator SpoVG -
  GCU76_RS00310 glmU 55921..57291 (+) 1371 WP_017696375.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  GCU76_RS00315 prsS 57314..58267 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  GCU76_RS00320 rplYB 58352..58966 (+) 615 WP_017696374.1 50S ribosomal protein L25/general stress protein Ctc -
  GCU76_RS00325 pth 59073..59639 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  GCU76_RS00330 subA/fin 59699..59929 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  GCU76_RS00335 mfd 59999..63532 (+) 3534 WP_017696373.1 transcription-repair coupling factor -
  GCU76_RS00340 spoVT 63668..64204 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=344141 GCU76_RS00330 WP_003243417.1 59699..59929(+) (subA/fin) [Bacillus subtilis strain JAAA]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=344141 GCU76_RS00330 WP_003243417.1 59699..59929(+) (subA/fin) [Bacillus subtilis strain JAAA]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1