Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   EPB55_RS16145 Genome accession   NZ_CP035732
Coordinates   23505..24605 (+) Length   366 a.a.
NCBI ID   WP_060534283.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2142-77     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 18505..29605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS16115 - 18749..20077 (-) 1329 WP_011081686.1 MATE family efflux transporter -
  EPB55_RS16120 - 20249..20563 (-) 315 WP_011081685.1 DUF496 family protein -
  EPB55_RS16125 - 20833..21042 (+) 210 WP_011081684.1 hypothetical protein -
  EPB55_RS16130 - 21108..21770 (+) 663 WP_123773369.1 YceH family protein -
  EPB55_RS16135 - 21770..22066 (+) 297 WP_011152477.1 GIY-YIG nuclease family protein -
  EPB55_RS16140 traF 22143..23318 (+) 1176 WP_015728163.1 conjugal transfer protein TraF -
  EPB55_RS16145 luxP 23505..24605 (+) 1101 WP_060534283.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  EPB55_RS16150 luxQ 24602..27174 (+) 2573 Protein_25 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  EPB55_RS16155 - 27171..27830 (-) 660 WP_011152472.1 PilZ domain-containing protein -
  EPB55_RS16160 - 27958..28932 (-) 975 WP_103277603.1 DMT family transporter -
  EPB55_RS16165 - 29080..29541 (+) 462 WP_011081676.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41356.88 Da        Isoelectric Point: 6.5926

>NTDB_id=344136 EPB55_RS16145 WP_060534283.1 23505..24605(+) (luxP) [Vibrio vulnificus strain 2142-77]
MKKILLTCLLASASFQVSSHTSEVLSGYWAYQEFLEKFPQQGVLTRELSEVVRNAPVPLKSHQSKPIRISVVFPGQQISD
YWVRNLSAFEKRMDKLHISYQINQVFTRPNADVKQQSVSLMEALKSKSDYLIFTLDTTRHRKFIEHVLDSSETKLILQNI
TTPVQAWDKRQPFLYVGFDHAEGSIALADKFKQLYPQGANYSVLYFSEGYVSDARGDTFIHQMNHSDRFALKSSFYTKAT
KASGYESAKNSLERYPDVDFIYACSTDVALGAIDALKELGRTNIKINGWGGGSAELDAIAVGDLDLTVMRMNDDTGIAMA
EAIKWDIEGRTVPTVFSGDFEVVTKEDSPEHIELLKKRAFRYSDQP

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=344136 EPB55_RS16145 WP_060534283.1 23505..24605(+) (luxP) [Vibrio vulnificus strain 2142-77]
ATGAAAAAGATATTACTAACTTGTTTATTAGCGTCAGCAAGTTTTCAAGTAAGCTCACATACGTCAGAAGTCCTCAGTGG
GTACTGGGCTTATCAAGAATTTTTGGAAAAATTTCCTCAACAAGGCGTGCTCACACGAGAACTGTCTGAGGTGGTCAGGA
ATGCGCCTGTACCTTTAAAGAGTCATCAATCCAAACCGATTCGAATTTCAGTGGTATTTCCTGGTCAGCAGATCTCCGAT
TACTGGGTAAGAAATCTTTCCGCGTTTGAGAAACGCATGGATAAGCTGCATATCAGTTACCAAATCAATCAGGTTTTCAC
GCGGCCAAATGCCGATGTTAAACAGCAAAGCGTCTCCTTGATGGAAGCGTTAAAGAGTAAATCGGATTACCTCATTTTTA
CGCTCGACACGACGCGTCACCGCAAGTTCATTGAGCATGTACTAGACTCTTCCGAAACCAAGCTGATTCTGCAAAATATC
ACCACACCGGTTCAAGCTTGGGATAAAAGACAGCCATTTCTCTACGTCGGTTTTGACCATGCGGAAGGGAGCATTGCACT
GGCCGATAAGTTTAAACAGCTTTACCCACAAGGTGCAAACTACTCAGTTCTTTACTTTTCTGAAGGTTACGTGAGTGATG
CTCGTGGTGACACCTTTATACATCAGATGAATCACAGTGACCGATTTGCACTAAAAAGCTCTTTCTACACCAAAGCGACC
AAAGCCTCAGGCTACGAGTCCGCAAAAAACAGTTTAGAGCGCTATCCTGATGTGGATTTTATCTACGCCTGTTCTACCGA
TGTGGCCCTGGGTGCCATTGATGCATTGAAAGAGTTGGGTCGCACAAACATCAAGATCAATGGATGGGGTGGTGGCTCTG
CTGAGCTTGACGCGATCGCGGTAGGTGACCTTGATTTGACGGTTATGCGCATGAACGATGATACGGGAATCGCTATGGCT
GAGGCGATCAAATGGGACATTGAAGGAAGAACTGTCCCGACTGTCTTTTCTGGCGACTTTGAAGTAGTGACAAAAGAAGA
CTCGCCAGAACACATCGAACTATTGAAAAAACGCGCGTTTAGATATTCAGATCAGCCATGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.11

99.727

0.639

Multiple sequence alignment