Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   EPB55_RS14540 Genome accession   NZ_CP035731
Coordinates   2966223..2967623 (+) Length   466 a.a.
NCBI ID   WP_011149911.1    Uniprot ID   A0AAN1PPC9
Organism   Vibrio vulnificus strain 2142-77     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2961223..2972623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS14515 rsxB 2961861..2962457 (-) 597 WP_011080896.1 electron transport complex subunit RsxB -
  EPB55_RS14520 rsxA 2962459..2963037 (-) 579 WP_011080895.1 electron transport complex subunit RsxA -
  EPB55_RS14530 - 2963635..2963820 (+) 186 WP_011080894.1 hypothetical protein -
  EPB55_RS14535 uvrB 2963919..2965949 (+) 2031 WP_013572115.1 excinuclease ABC subunit UvrB -
  EPB55_RS14540 luxO 2966223..2967623 (+) 1401 WP_011149911.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EPB55_RS14545 luxU 2967623..2967970 (+) 348 WP_011080891.1 quorum-sensing phosphorelay protein LuxU -
  EPB55_RS14550 - 2968071..2968961 (-) 891 WP_130194773.1 YvcK family protein -
  EPB55_RS14555 moaA 2969277..2970266 (+) 990 WP_060532977.1 GTP 3',8-cyclase MoaA -
  EPB55_RS14560 moaB 2970347..2970859 (+) 513 WP_011080888.1 molybdenum cofactor biosynthesis protein B -
  EPB55_RS14565 moaC 2970870..2971349 (+) 480 WP_154142518.1 cyclic pyranopterin monophosphate synthase MoaC -
  EPB55_RS14570 moaD 2971346..2971591 (+) 246 WP_011080886.1 molybdopterin synthase sulfur carrier subunit -
  EPB55_RS14575 moaE 2971593..2972048 (+) 456 WP_011080885.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52120.68 Da        Isoelectric Point: 6.2540

>NTDB_id=344132 EPB55_RS14540 WP_011149911.1 2966223..2967623(+) (luxO) [Vibrio vulnificus strain 2142-77]
MQQITTTKQRYLLMVEDTASVAALYRSYLMPLGIDINIVGTGRDAIDSLKHRIPDLILLDLRLPDMTGMDVLHAVKASHP
DVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKASKLKNDADSAGSQNYQGFIGSSQKMQQVYRTI
DSAASSKASIFITGESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGG
TLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRER
GEDVIEIAYSLLGYMSHEEGKNFVRFSQPVIDRFNEYEWPGNVRQLQNVLRNVVVLNNGKEITMEMLPPPLNQPFERKES
VQPDLSELISVRDICPLWLTEKLAIEQAIKACDGNIPRAAGYLDVSPSTIYRKLQAWNEKEEKQKA

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=344132 EPB55_RS14540 WP_011149911.1 2966223..2967623(+) (luxO) [Vibrio vulnificus strain 2142-77]
ATGCAACAAATAACGACAACGAAACAGCGCTACTTGCTGATGGTAGAAGACACCGCTTCTGTCGCAGCCCTCTATCGCTC
CTATCTCATGCCATTGGGTATCGATATCAATATCGTGGGTACTGGGCGTGACGCGATAGACAGTTTAAAACATCGCATTC
CAGATCTTATTCTGCTGGATTTACGTCTACCGGACATGACGGGAATGGACGTATTGCATGCAGTGAAAGCAAGTCACCCT
GATGTTCCTATCATTTTCATGACCGCACACGGCTCGATCGATACTGCCGTTGAAGCTATGCGACATGGGTCTCAGGATTT
TCTTATCAAGCCATGCGAAGCGGATCGCTTGAGGGTCACGGTAAACAACGCTATCCGCAAAGCGAGCAAATTGAAGAATG
ATGCGGACAGTGCAGGCAGCCAAAATTATCAAGGCTTTATCGGCAGTAGCCAAAAAATGCAGCAGGTTTATCGCACCATT
GACTCTGCGGCGAGCAGTAAAGCAAGCATCTTTATCACAGGTGAAAGTGGTACAGGTAAAGAGGTGTGCGCAGAAGCCAT
TCATGCGGCCAGTCGACGTGGAGACAAGCCATTTATCGCGATTAACTGTGCTGCGATCCCCAAGGATTTGATTGAAAGCG
AGCTATTTGGTCATGTCAAAGGTGCGTTTACCGGCGCTGCGACTGATCGCCAAGGGGCGGCAGAGCTCGCTGATGGGGGC
ACACTTTTCCTGGATGAGTTGTGTGAAATGGACCTGGATCTGCAAACAAAATTGCTGCGTTTTATCCAAACGGGTACTTT
CCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTTGACGTACGTTTTGTGTGTGCGACAAACCGAGACCCCTGGAAAGAGG
TACAAGAAGGGCGCTTTCGTGAAGATTTGTACTACCGACTTTATGTGATTCCACTGCACTTGCCACCACTTCGTGAACGT
GGAGAGGATGTCATCGAGATCGCTTACTCGTTACTGGGTTACATGTCACACGAGGAAGGGAAAAACTTTGTTCGTTTCTC
TCAACCTGTGATAGATAGATTTAACGAATATGAGTGGCCAGGTAATGTGCGTCAGTTACAAAATGTGCTGCGTAATGTCG
TGGTTCTTAACAACGGTAAAGAGATTACCATGGAGATGCTGCCGCCTCCTTTGAACCAGCCCTTTGAACGCAAAGAAAGT
GTGCAGCCTGATCTGAGTGAGTTGATTTCCGTCAGGGATATTTGTCCATTGTGGTTGACAGAGAAACTGGCGATTGAACA
AGCGATCAAAGCGTGTGATGGTAACATTCCGAGAGCCGCTGGCTATCTGGATGTCAGCCCGTCAACGATTTATCGCAAGT
TACAGGCGTGGAACGAAAAAGAAGAAAAACAGAAAGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(13-121)

Sigma-54 interaction domain (Sigma54_activat)

(147-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.714

96.137

0.824

Multiple sequence alignment