Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SDEG_RS10050 Genome accession   NC_012891
Coordinates   2011307..2012020 (+) Length   237 a.a.
NCBI ID   WP_002982243.1    Uniprot ID   A0A9X5LXW4
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2006307..2017020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS10040 (SDEG_2068) treC 2007377..2009005 (-) 1629 WP_002991331.1 alpha,alpha-phosphotrehalase -
  SDEG_RS10045 (SDEG_2069) treP 2009072..2011096 (-) 2025 WP_012767635.1 PTS system trehalose-specific EIIBC component -
  SDEG_RS10050 (SDEG_2070) treR 2011307..2012020 (+) 714 WP_002982243.1 trehalose operon repressor Regulator
  SDEG_RS10055 (SDEG_2071) - 2012299..2012636 (-) 338 Protein_1947 helix-turn-helix domain-containing protein -
  SDEG_RS10060 (SDEG_2072) - 2012823..2013677 (+) 855 Protein_1948 VOC family protein -
  SDEG_RS10065 (SDEG_2073) yaaA 2013719..2014450 (+) 732 WP_012767637.1 peroxide stress protein YaaA -
  SDEG_RS10070 (SDEG_2074) nrdG 2014624..2015238 (-) 615 WP_003058750.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  SDEG_RS10075 (SDEG_2075) - 2015242..2015745 (-) 504 WP_003058815.1 GNAT family N-acetyltransferase -
  SDEG_RS10080 (SDEG_2076) - 2015754..2016689 (-) 936 WP_012767638.1 Gfo/Idh/MocA family protein -
  SDEG_RS11225 (SDEG_2077) - 2016718..2016864 (-) 147 WP_003053094.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27592.78 Da        Isoelectric Point: 9.6226

>NTDB_id=34413 SDEG_RS10050 WP_002982243.1 2011307..2012020(+) (treR) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MTKYERIYKDLETKINKDFYKEGDFLPTEIELSQQYQASRDTVRKALSLLTKAGLILKKQGRGTQVIKHHQIMFPISELT
SYQELVSYSNLDSKTNVIAIDKLIVDETLSKLTGFSKNSLVWRVTRQRVVEGVASVLDIDYLSKTLVPIMTREIAEHSIY
QYLEKELHLAIDFALKEVTIDQITDRDKILLDLGSDQHVVSVKSKVYLSNNNQFQFTESRHKLEKFKFLDFARRRPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=34413 SDEG_RS10050 WP_002982243.1 2011307..2012020(+) (treR) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGACAAAGTATGAACGTATTTATAAAGACCTCGAAACAAAAATAAACAAAGACTTTTACAAAGAAGGGGATTTTTTACC
TACTGAAATAGAATTGAGTCAACAGTACCAAGCTAGCCGAGATACCGTCCGCAAGGCTCTCTCGCTTCTCACTAAGGCAG
GCCTTATCCTCAAAAAACAAGGACGTGGCACCCAAGTGATTAAGCATCATCAGATCATGTTCCCCATCTCAGAACTAACT
AGCTATCAGGAACTCGTCTCTTACTCAAATCTAGATTCTAAGACCAACGTCATTGCCATTGATAAACTGATTGTGGATGA
GACACTTTCAAAATTGACCGGTTTTAGCAAAAACAGCTTGGTCTGGCGTGTTACACGCCAACGCGTTGTTGAGGGTGTGG
CTTCCGTCTTAGACATTGATTACCTTAGTAAAACTTTGGTGCCAATAATGACAAGGGAAATCGCAGAGCATTCTATTTAT
CAATATTTGGAAAAGGAACTCCATCTCGCCATTGACTTTGCCCTCAAAGAGGTTACCATTGACCAAATAACCGATCGTGA
TAAAATTTTACTTGACCTTGGATCAGACCAACATGTTGTTTCCGTCAAATCCAAAGTCTACCTTTCCAATAATAACCAAT
TCCAATTCACCGAGAGTCGCCATAAACTGGAAAAATTTAAATTTTTAGATTTTGCTCGGCGCAGACCAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

68.803

98.734

0.679

Multiple sequence alignment