Detailed information NTG0344118

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: EPB55_RS08010
• Genome accession: NZ_CP035731
• Coordinates: 1589901..1590908 (+)
• Length: 335 a.a.
• NCBI ID: WP_011079334.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 2142-77
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1584901..1595908

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB55_RS07990	metJ	1585005..1585322 (+)	318	WP_011079338.1	met regulon transcriptional regulator MetJ	-
EPB55_RS07995	-	1585409..1586686 (-)	1278	WP_011079337.1	malic enzyme-like NAD(P)-binding protein	-
EPB55_RS08000	rpmE	1586965..1587186 (-)	222	WP_011079336.1	50S ribosomal protein L31	-
EPB55_RS08005	priA	1587467..1589672 (+)	2206	Protein_1513	primosomal protein N'	-
EPB55_RS08010	cytR	1589901..1590908 (+)	1008	WP_011079334.1	DNA-binding transcriptional regulator CytR	Regulator
EPB55_RS08015	-	1591018..1591575 (+)	558	WP_011151294.1	SPOR domain-containing protein	-
EPB55_RS08020	hslV	1591726..1592280 (+)	555	WP_017419639.1	ATP-dependent protease subunit HslV	-
EPB55_RS08025	hslU	1592308..1593639 (+)	1332	WP_011079331.1	HslU--HslV peptidase ATPase subunit	-
EPB55_RS08030	-	1593805..1594722 (+)	918	WP_103277321.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
EPB55_RS08035	rraA	1594798..1595319 (+)	522	WP_011079329.1	ribonuclease E activity regulator RraA	-
EPB55_RS08040	zapB	1595541..1595783 (+)	243	WP_011079328.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36842.38 Da
• Isoelectric Point: 6.4904

>NTDB_id=344118 EPB55_RS08010 WP_011079334.1 1589901..1590908(+) (cytR) [Vibrio vulnificus strain 2142-77]
MATMKDVAQLAGVSTATVSRALMNPDKVSATTRKRVEDAVLEAGYSPNSLARNLRRNESRTIVAIVPDICDPYYTEIIRG
IEDAAIEQGYLVLLGDSGQQKRRESSLVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPDLELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPKSAALCQFRQQGYQQALRRAGITMNPQYCVESEFSFEGGAKAIRHLLEMNDAPTA
VFCHCDTMAIGAIQEAKKLGFRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDIHSGSRLLE
TKLVVRGSAAPPGLR

Nucleotide

• Length: 1008 bp

>NTDB_id=344118 EPB55_RS08010 WP_011079334.1 1589901..1590908(+) (cytR) [Vibrio vulnificus strain 2142-77]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGAGTTTCAACGGCAACGGTTTCGAGAGCGCTGATGAATCCAGACAA
AGTATCCGCCACAACGCGTAAGCGTGTGGAAGATGCGGTGTTGGAAGCTGGTTATTCCCCAAACTCGCTGGCACGCAATT
TACGCCGCAACGAGTCACGCACTATCGTCGCGATCGTTCCTGACATTTGTGATCCTTACTACACAGAGATCATTCGTGGC
ATTGAAGATGCCGCCATTGAACAGGGATATTTGGTTCTACTCGGTGACAGCGGCCAACAAAAGCGCCGCGAAAGCTCACT
CGTCAATCTCGTTTTTACCAAGCAAGCGGATGGTATGCTATTGCTCGGTACTGACTTACCGTTTGATGTGAGCAAGCCAG
AACAGAAAAATCTTCCTCCAATGGTCATGGCTTGCGAGTTCGCCCCCGATCTCGAACTGCCGACGGTTCATATCGATAAC
TTGACCTCAGCATTTGAAGCGGTGAACTACCTGACCCAATTGGGCCACAAACGCATCGCCCAAATTTCAGGGCCAAAATC
CGCAGCACTTTGTCAGTTTAGACAACAAGGCTATCAACAAGCTTTACGCCGTGCAGGCATCACAATGAACCCACAATACT
GTGTTGAGTCTGAGTTCTCTTTTGAAGGTGGGGCGAAAGCGATCCGTCATCTGCTAGAAATGAATGACGCGCCAACCGCC
GTTTTCTGCCATTGTGACACCATGGCTATCGGGGCGATTCAAGAAGCGAAAAAATTGGGCTTCCGAGTACCGCAAGATCT
GTCGATTGTCGGCTTCGATGACATTCAGTTTGCCCAATATTGCGATCCTCCGCTAACCACCATCTCACAGCCACGCTATG
AGATTGGTCGTCAAGCGATGCTGATGATGTTAGAGCTGCTGAAAGGACATGACATTCACAGTGGCTCACGCTTACTTGAA
ACCAAATTGGTGGTTCGTGGTAGCGCAGCGCCTCCAGGCTTACGCTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	89.759	99.104	0.89
cytR	Vibrio cholerae C6706	88.253	99.104	0.875