Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SDEG_RS09610 Genome accession   NC_012891
Coordinates   1905502..1906863 (-) Length   453 a.a.
NCBI ID   WP_037589774.1    Uniprot ID   A0AB38Y3U5
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1900502..1911863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS09585 (SDEG_1968) - 1901223..1902491 (-) 1269 WP_012767572.1 MFS transporter -
  SDEG_RS09590 (SDEG_1969) - 1902586..1903287 (-) 702 WP_012767573.1 hypothetical protein -
  SDEG_RS09595 (SDEG_1970) - 1903291..1903737 (-) 447 WP_003053367.1 LytTR family DNA-binding domain-containing protein -
  SDEG_RS09600 (SDEG_1971) - 1903966..1904682 (-) 717 WP_012767574.1 TIGR00266 family protein -
  SDEG_RS09605 (SDEG_1972) - 1904818..1905312 (-) 495 WP_003053380.1 beta-class carbonic anhydrase -
  SDEG_RS09610 (SDEG_1973) radA 1905502..1906863 (-) 1362 WP_037589774.1 DNA repair protein RadA Machinery gene
  SDEG_RS09615 (SDEG_1974) - 1906946..1907392 (-) 447 WP_003053378.1 dUTP diphosphatase -
  SDEG_RS09620 (SDEG_1975) - 1907500..1908267 (-) 768 WP_012767575.1 epoxyqueuosine reductase QueH -
  SDEG_RS09625 (SDEG_1976) - 1908386..1910170 (-) 1785 WP_012767576.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49337.63 Da        Isoelectric Point: 6.0944

>NTDB_id=34411 SDEG_RS09610 WP_037589774.1 1905502..1906863(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLILIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRTEIE
NLNPDFLIIDSIQTIISPDITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGISIPNGIEVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=34411 SDEG_RS09610 WP_037589774.1 1905502..1906863(-) (radA) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATAGCAAAGAAAAAAGCAACCTTCATTTGTCAAGAATGTGGGTATCAGTCACCCAAATATTTAGGGCGTTGCCCAAACTG
CTCGGCCTGGTCTTCCTTTGTGGAAGAAGTTGAGGTCAAAGAGGTTAAAAATGCTCGTGTCAGTTTGACAGGTGAGAAAA
GTAAGCCCGTTAAATTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTC
CTTGGTGGCGGTGTCGTTCCGGGGAGCTTGATTTTAATTGGTGGGGATCCAGGTATTGGGAAGTCCACCTTGCTCTTGCA
GGTATCTACCCAGCTAGCTAATAAGGGAACTGTTCTGTATGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTTCGGA
GTGAGCGTCTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAAACCAATATGCAGGCCATTCGTACAGAGATTGAA
AACCTGAATCCAGATTTCTTGATTATTGATTCTATCCAAACCATTATAAGTCCTGATATTACAGGTGTTCAAGGATCAGT
GAGTCAGGTGAGAGAAGTCACTGCCGAATTGATGCAACTTGCAAAGACTAACAACATTGCAACCTTTATTGTAGGACATG
TTACCAAGGAAGGAACCTTAGCTGGTCCCCGTATGTTAGAACATATGGTGGATACCGTTCTCTACTTTGAAGGGGAAAGG
CATCATACTTTTCGCATCTTGCGGGCGGTGAAAAACCGTTTTGGCTCTACCAACGAGATCGGCATTTTTGAAATGCAATC
AGCTGGACTTGTTGAGGTCTTAAACCCAAGCCAAGTTTTTCTTGAAGAACGATTAGATGGTGCTACAGGCTCCGCCATTG
TGGTGACCATGGAGGGTAGTCGTCCAATTTTAGCGGAAGTCCAATCTTTGGTAACCCCAACCGTTTTTGGTAATGCTAGA
CGAACCACTACGGGACTTGATTTCAATCGCGTAAGCCTAATCATGGCAGTCTTAGAAAAACGCTGTGGGCTTCTCTTGCA
AAATCAAGATGCCTACCTCAAATCGGCTGGTGGTGTCAAGCTAGACGAACCTGCCATTGATTTAGCTGTAGCCGTAGCCA
TCGCATCCAGTTATAAAGAAAAACCAACCAACCCTCAGGAAGCCTTCTTAGGAGAGATTGGGTTGACTGGTGAGATTCGG
CGGGTGACCCGTATCGAACAACGAATTAATGAAGCAGCCAAGCTTGGTTTTACTAAAATTTACGCCCCTAAAAATGCTCT
GCAGGGCATCAGTATTCCTAATGGTATTGAAGTGGTGGGTGTGACAACAGTTGGTCAGGTTTTAAAGGCCGTTTTTGGCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(57-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

86.504

99.779

0.863
  radA Streptococcus pneumoniae Rx1

86.283

99.779

0.861
  radA Streptococcus pneumoniae D39

86.283

99.779

0.861
  radA Streptococcus pneumoniae R6

86.283

99.779

0.861
  radA Streptococcus pneumoniae TIGR4

86.283

99.779

0.861
  radA Streptococcus mitis SK321

86.283

99.779

0.861
  radA Bacillus subtilis subsp. subtilis str. 168

61.926

100

0.625

Multiple sequence alignment