Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EPB55_RS06800 Genome accession   NZ_CP035731
Coordinates   1342189..1342707 (-) Length   172 a.a.
NCBI ID   WP_011079537.1    Uniprot ID   Q7MHS7
Organism   Vibrio vulnificus strain 2142-77     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1337189..1347707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS06775 rimM 1337285..1337833 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  EPB55_RS06780 rpsP 1337849..1338097 (-) 249 WP_011079541.1 30S ribosomal protein S16 -
  EPB55_RS06785 ffh 1338351..1339727 (-) 1377 WP_011079540.1 signal recognition particle protein -
  EPB55_RS06790 - 1339941..1340735 (+) 795 WP_011079539.1 inner membrane protein YpjD -
  EPB55_RS06795 - 1340822..1342099 (+) 1278 WP_011079538.1 CNNM domain-containing protein -
  EPB55_RS06800 luxS 1342189..1342707 (-) 519 WP_011079537.1 S-ribosylhomocysteine lyase Regulator
  EPB55_RS06805 - 1342758..1343363 (-) 606 WP_241670310.1 hypothetical protein -
  EPB55_RS06810 gshA 1343401..1344966 (-) 1566 WP_047108898.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18899.69 Da        Isoelectric Point: 5.2384

>NTDB_id=344104 EPB55_RS06800 WP_011079537.1 1342189..1342707(-) (luxS) [Vibrio vulnificus strain 2142-77]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRKHLNGASVEIIDISP
MGCRTGFYMSLIGAPSEQDVASAWTASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAQNILAAGISVNKNDELA
LPEAMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=344104 EPB55_RS06800 WP_011079537.1 1342189..1342707(-) (luxS) [Vibrio vulnificus strain 2142-77]
ATGCCATTATTAGATAGTTTTACCGTTGACCACACTCGCATGCATGCACCCGCGGTGCGTGTGGCAAAAACCATGCAGAC
GCCAAAAGGCGACACCATTACCGTGTTTGACTTACGTTTCACTGCACCTAACAAAGATATTTTGTCAGAGAAAGGCATTC
ACACGTTAGAGCACCTGTACGCAGGCTTTATGCGTAAGCATCTTAATGGCGCATCGGTTGAGATCATCGATATCTCACCG
ATGGGTTGTCGCACCGGTTTCTACATGAGCTTAATTGGTGCGCCGAGTGAGCAAGACGTGGCATCTGCGTGGACGGCTTC
GATGGAAGATGTGTTGAAAGTGGAAAGCCAAAACAAGATCCCTGAGTTGAACGAGTATCAGTGTGGTACCGCGGCCATGC
ACTCGCTAGATGAAGCGAAGCAAATCGCGCAGAACATTCTGGCAGCAGGAATTTCGGTGAATAAAAACGATGAACTGGCA
TTGCCAGAAGCGATGTTGAAAGAGCTCAAAGTGGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MHS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866

Multiple sequence alignment