Detailed information NTG0034409

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: PARA_RS08355
• Genome accession: NC_015964
• Coordinates: 1682640..1684061 (-)
• Length: 473 a.a.
• NCBI ID: WP_014065388.1
• Uniprot ID: -
• Organism: Haemophilus parainfluenzae T3T1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1677640..1689061

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PARA_RS08325 (PARA_16460)	-	1678452..1678781 (-)	330	WP_014065383.1	TusE/DsrC/DsvC family sulfur relay protein	-
PARA_RS08330 (PARA_16470)	ttcA	1678783..1679712 (-)	930	WP_014065384.1	tRNA 2-thiocytidine(32) synthetase TtcA	-
PARA_RS10475 (PARA_16480)	-	1680061..1680285 (-)	225	WP_014065385.1	DUF2513 domain-containing protein	-
PARA_RS08345 (PARA_16490)	ftnA	1680865..1681365 (-)	501	WP_014065386.1	non-heme ferritin	-
PARA_RS08350 (PARA_16500)	ftnA	1681386..1681871 (-)	486	WP_014065387.1	non-heme ferritin	-
PARA_RS08355 (PARA_16510)	sbcB	1682640..1684061 (-)	1422	WP_014065388.1	exodeoxyribonuclease I	Machinery gene
PARA_RS08360 (PARA_16520)	-	1684064..1684936 (-)	873	WP_014065389.1	DMT family transporter	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54477.89 Da
• Isoelectric Point: 5.5465

>NTDB_id=34409 PARA_RS08355 WP_014065388.1 1682640..1684061(-) (sbcB) [Haemophilus parainfluenzae T3T1]
MANNFSFFIYDYESFGINPASDRPAQFAGIRTDADFNIIGEPVMLYCKQTNDYLPAPEAVMVTGITPQECNEKGIPEPEF
AAKILAEFSQPNTCVMGYNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPEGINWAYDDDGMPSF
RLEKLTKANGIEHENAHDAMADVYATIAMAKLIKEKQPKLFQFFFEHRGKKEIEKLIDTAEMTPLVHVSGMLGNYRGNCA
WVAPLAWHPTNQNAVIVCDLSGDINNLLSKSAVDLRQDLYTKKSELEERGVSSIPLKLVHINKCPILAPAKTLLPENAAR
LGIDRQHCLDNLAKLRQSLDIREKVIEIFSGEREFEPSNNVETELYNGFFSNADKNNMAILRDLPAEKLAEHGLAFEDKR
IPELLFHYRARHFYKTLNRAEQIKWQKYRQRKLEQSAVKFEESLQRLAEEYSDNPTKLNLLQQVYEYGAKLLS

Nucleotide

• Length: 1422 bp

>NTDB_id=34409 PARA_RS08355 WP_014065388.1 1682640..1684061(-) (sbcB) [Haemophilus parainfluenzae T3T1]
ATGGCAAACAATTTTAGTTTTTTTATCTACGATTACGAAAGTTTTGGTATCAATCCGGCAAGTGATCGTCCAGCTCAATT
TGCTGGTATTCGTACCGATGCAGATTTTAATATTATTGGCGAGCCTGTTATGTTGTATTGCAAGCAAACCAATGATTATT
TGCCTGCCCCGGAAGCCGTAATGGTCACAGGAATTACACCACAAGAATGTAATGAAAAGGGAATTCCTGAACCTGAATTC
GCCGCAAAAATTCTAGCTGAATTTTCACAACCCAATACTTGTGTGATGGGTTACAACAACATTCGTTATGATGATGAAAT
GACTCGTTATACCTTTTACCGTAACTTCATCGATCCCTATGAATATAGCTGGAAAAATGGTAATTCTCGTTGGGATTTAC
TGGATTTAGTGCGCGCCTGTTATGCTTTGCGTCCTGAAGGCATTAATTGGGCCTATGACGATGATGGAATGCCAAGCTTC
CGCTTAGAAAAACTAACCAAAGCAAATGGCATTGAGCATGAAAATGCCCATGATGCGATGGCTGATGTGTATGCAACCAT
CGCCATGGCTAAATTAATTAAAGAAAAGCAGCCTAAATTATTTCAATTCTTCTTTGAGCATAGAGGTAAAAAGGAAATTG
AGAAACTGATCGATACCGCTGAAATGACACCATTAGTGCACGTTTCGGGCATGCTGGGTAATTATCGCGGCAACTGTGCT
TGGGTGGCACCATTAGCATGGCATCCTACTAATCAGAATGCTGTAATCGTCTGTGATTTATCTGGTGATATTAATAATTT
ACTCAGTAAAAGTGCGGTTGATTTGCGACAAGATTTATATACCAAGAAAAGCGAGCTAGAAGAAAGGGGAGTTTCATCAA
TCCCACTAAAATTGGTTCATATAAATAAATGCCCAATTTTGGCGCCTGCAAAAACGTTACTGCCGGAAAATGCAGCTCGT
TTAGGGATAGATAGACAACATTGCTTAGATAATTTAGCAAAATTGCGCCAATCCTTAGATATTCGCGAGAAAGTTATTGA
AATCTTCTCAGGAGAACGAGAATTTGAGCCGAGTAATAATGTAGAAACTGAACTTTATAATGGTTTCTTTAGCAATGCCG
ATAAAAACAATATGGCTATTTTACGCGATTTACCAGCTGAAAAATTAGCTGAACATGGTTTAGCATTTGAAGATAAACGA
ATTCCTGAATTGTTATTCCATTATCGTGCCAGACATTTCTATAAAACTCTAAATCGTGCTGAGCAAATCAAATGGCAAAA
ATATCGCCAACGTAAATTAGAACAAAGTGCGGTTAAATTTGAGGAAAGTCTACAACGGTTAGCGGAGGAATATTCTGATA
ATCCAACCAAACTGAATTTACTGCAACAGGTTTATGAATACGGAGCAAAACTGTTATCTTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (208-469)

• Exonuclease (RNase_T) (9-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	55.579	98.52	0.548