Detailed information NTG0034409

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: SDEG_RS09370
• Genome accession: NC_012891
• Coordinates: 1856586..1857518 (-)
• Length: 310 a.a.
• NCBI ID: WP_003060110.1
• Uniprot ID: A0A9X8T5Q4
• Organism: Streptococcus dysgalactiae subsp. equisimilis GGS_124
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1851586..1862518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDEG_RS09345 (SDEG_1921)	tsaD	1852076..1853092 (-)	1017	WP_012767554.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
SDEG_RS09350 (SDEG_1922)	rimI	1853082..1853507 (-)	426	WP_003056684.1	ribosomal protein S18-alanine N-acetyltransferase	-
SDEG_RS09355 (SDEG_1923)	tsaB	1853509..1854207 (-)	699	WP_003062223.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
SDEG_RS09360 (SDEG_1924)	-	1854493..1854723 (+)	231	WP_003056704.1	DNA-dependent RNA polymerase subunit epsilon	-
SDEG_RS09365 (SDEG_1925)	rnjA	1854725..1856407 (+)	1683	WP_003056700.1	ribonuclease J1	-
SDEG_RS09370 (SDEG_1926)	amiF	1856586..1857518 (-)	933	WP_003060110.1	ABC transporter ATP-binding protein	Regulator
SDEG_RS09375 (SDEG_1927)	oppD	1857511..1858563 (-)	1053	WP_012767556.1	ABC transporter ATP-binding protein	Regulator
SDEG_RS09380 (SDEG_1928)	-	1858575..1859606 (-)	1032	WP_003058013.1	ABC transporter permease	-
SDEG_RS09385 (SDEG_1929)	-	1859616..1860530 (-)	915	WP_003052794.1	ABC transporter permease	-
SDEG_RS09390 (SDEG_1930)	-	1860798..1862453 (-)	1656	WP_003058031.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35203.02 Da
• Isoelectric Point: 6.6437

>NTDB_id=34409 SDEG_RS09370 WP_003060110.1 1856586..1857518(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MNDNRKKLVELKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITPGHFVLATQEEADQYRREYH

Nucleotide

• Length: 933 bp

>NTDB_id=34409 SDEG_RS09370 WP_003060110.1 1856586..1857518(-) (amiF) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGAATGATAATCGAAAGAAATTAGTAGAGTTAAAAAATGTCTCCTTAACTTTCAATAAGGGAAAGAAAAACGAAGTCAA
AGCCATTGATAATGTGAGCTTTGATATTTATGAAGGGGAAGTGTTTGGACTGGTTGGGGAATCCGGATCAGGAAAAACAA
CTGTTGGTCGCGCTATTTTAAAGCTTTATGATATTAATGAAGGGGAAATTATTTTTAATGGTGAAACCGTTTCTCATTTG
AAAGGGAAAGACTTGCGGACCTTTCGTAAGGATGCTCAGATGATTTTCCAAGATCCTCAGGCTAGTCTTAACGGCCGTAT
GAAAATCAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGACTCACAGCTTCAAAGGCAGAACGAGAAGAACGCGTGC
AAGAACTCCTTGATTTGGTTGGGTTGAACAAGGACCATTTGACACGTTACCCCCATGAATTTTCTGGTGGTCAACGTCAA
CGGATTGGGATTGCCCGTGCTTTGGCAGTTAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTCGATGTGTC
GATTCAGGCCCAGGTAGTTAACTTGATGCAAAAGCTTCAGCACAAACGTGGATTGACCTATCTTTTTATTGCCCATGACT
TGTCAATGGTCAAATACATTTCTGACCGTATCGGAGTCATGCACTGGGGTAAAATGTTGGAGATTGGGACCTCAGATGAT
GTCTATAATCATCCTATTCATCCTTATACCAAGAGCCTACTCTCGGCTATTCCTGAACCAGATCCAGACAAAGAACGTCA
GCGGGTGGCTGATGTATATGATCCAAGTCAAGAATTGGACGGCCAAGAACGTCAGATGCATGAGATTACGCCAGGCCATT
TTGTCTTAGCTACCCAAGAAGAAGCAGACCAATATCGACGGGAGTATCATTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-268)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.098	98.387	0.532
amiF	Streptococcus thermophilus LMG 18311	53.77	98.387	0.529
amiF	Streptococcus salivarius strain HSISS4	53.443	98.387	0.526