Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GBF15_RS05485 Genome accession   NZ_CP045277
Coordinates   1121125..1121640 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LAU-OXA     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1116125..1126640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBF15_RS05440 csrA 1116712..1116897 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GBF15_RS05470 yqaB 1118355..1118921 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GBF15_RS05475 yqaA 1118918..1119346 (+) 429 WP_001287454.1 YqaA family protein -
  GBF15_RS05480 gshA 1119419..1120975 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  GBF15_RS05485 luxS 1121125..1121640 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GBF15_RS05490 emrB 1121704..1123242 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GBF15_RS05495 emrA 1123259..1124431 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GBF15_RS05500 emrR 1124558..1125088 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GBF15_RS05505 ygaH 1125179..1125514 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  GBF15_RS05510 ygaZ 1125504..1126241 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=344079 GBF15_RS05485 WP_001130211.1 1121125..1121640(+) (luxS) [Escherichia coli strain LAU-OXA]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=344079 GBF15_RS05485 WP_001130211.1 1121125..1121640(+) (luxS) [Escherichia coli strain LAU-OXA]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731