Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SDEG_RS08735 Genome accession   NC_012891
Coordinates   1722356..1723081 (-) Length   241 a.a.
NCBI ID   WP_012767492.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1717356..1728081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS08705 (SDEG_1792) nusA 1717551..1718708 (-) 1158 WP_041789227.1 transcription termination factor NusA -
  SDEG_RS08710 (SDEG_1793) rimP 1718851..1719345 (-) 495 WP_044022604.1 ribosome maturation factor RimP -
  SDEG_RS08720 (SDEG_1795) trmB 1719828..1720463 (-) 636 WP_003052470.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SDEG_RS08725 (SDEG_1796) - 1720463..1721254 (-) 792 WP_003052472.1 cell cycle regulator CcrZ -
  SDEG_RS08730 (SDEG_1797) - 1721319..1722353 (-) 1035 WP_012767491.1 ABC transporter permease -
  SDEG_RS08735 (SDEG_1798) pptA 1722356..1723081 (-) 726 WP_012767492.1 ABC transporter ATP-binding protein Regulator
  SDEG_RS08740 (SDEG_1799) - 1723153..1723572 (+) 420 WP_012767493.1 HIT family protein -
  SDEG_RS08745 (SDEG_1800) - 1723569..1723898 (+) 330 WP_003057072.1 hypothetical protein -
  SDEG_RS08750 (SDEG_1801) - 1724056..1725324 (-) 1269 WP_041789135.1 biofilm formation/cell division transcriptional regulator BrpA -
  SDEG_RS08755 (SDEG_1802) - 1725336..1725857 (-) 522 WP_003057063.1 GNAT family N-acetyltransferase -
  SDEG_RS08760 (SDEG_1803) tsaE 1725850..1726293 (-) 444 WP_041789229.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SDEG_RS08765 (SDEG_1804) - 1726470..1727930 (-) 1461 WP_012767496.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26416.65 Da        Isoelectric Point: 4.6450

>NTDB_id=34405 SDEG_RS08735 WP_012767492.1 1722356..1723081(-) (pptA) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MLNIENLTGGYLNIPVLKEVSFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYQGEISIDGLTLAADPATYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAQKRAEPFLKMFRLADKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIQTLELEKGKGKSILMSTHVLDSAEKMCDRFVILHHGQVRAQGTLADLQDAFGDASASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=34405 SDEG_RS08735 WP_012767492.1 1722356..1723081(-) (pptA) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGTTAAACATTGAAAATCTAACGGGGGGTTACCTCAATATTCCCGTTTTAAAAGAGGTCTCATTTTCTGTTGGCAATGG
TGAATTAGTTGGGTTGATAGGCTTAAATGGAGCTGGAAAATCAACAACTATCAATGAAATTATTGGTTTTTTAAAACCTT
ATCAGGGAGAAATCTCGATTGATGGACTAACCTTGGCTGCAGATCCAGCTACCTATCGTAAGAAAATTGGATTTATCCCA
GAGACACCTAGCCTCTATGAAGAATTAACTTTGGCAGAGCATATTAATACTGTGGCTATGGCCTATGATATTGATGTGGA
ATTGGCACAAAAACGAGCAGAACCGTTTTTAAAGATGTTCCGCTTAGCTGATAAATTAGATTGGTTTCCTGTTCATTTTT
CAAAAGGCATGAAGCAAAAAGTCATGATTATCTGTGCTTTTGTGATTGATCCAAGTCTGTTTATCCTTGACGAGCCATTT
TTAGGATTAGACCCGTTGGCTATCTCAGACTTGATTCAGACTTTGGAGCTTGAAAAAGGCAAAGGCAAATCGATTTTAAT
GAGTACTCATGTGCTTGACTCTGCTGAGAAAATGTGTGATCGTTTTGTCATTCTGCATCATGGTCAAGTACGGGCTCAGG
GAACGCTTGCTGACTTGCAGGATGCCTTTGGTGATGCTTCTGCTAGCCTTAACGATATTTACCTGGCATTGACAAAAGAG
GGCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

99.17

0.747
  pptA Streptococcus thermophilus LMD-9

74.477

99.17

0.739

Multiple sequence alignment