Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GC231_RS18715 Genome accession   NZ_CP045213
Coordinates   3814672..3815187 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain EH41     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3809672..3820187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GC231_RS18690 (GC231_18790) ygaZ 3810071..3810808 (+) 738 WP_000445660.1 L-valine exporter subunit YgaZ -
  GC231_RS18695 (GC231_18795) ygaH 3810798..3811133 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  GC231_RS18700 (GC231_18800) emrR 3811224..3811754 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GC231_RS18705 (GC231_18805) emrA 3811881..3813053 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GC231_RS18710 (GC231_18810) emrB 3813070..3814608 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GC231_RS18715 (GC231_18815) luxS 3814672..3815187 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GC231_RS18720 (GC231_18820) gshA 3815337..3816893 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  GC231_RS18725 (GC231_18825) yqaA 3816966..3817394 (-) 429 WP_001287457.1 YqaA family protein -
  GC231_RS18730 (GC231_18830) yqaB 3817391..3817957 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GC231_RS18760 (GC231_18860) csrA 3819550..3819735 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=344027 GC231_RS18715 WP_001130211.1 3814672..3815187(-) (luxS) [Escherichia coli strain EH41]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=344027 GC231_RS18715 WP_001130211.1 3814672..3815187(-) (luxS) [Escherichia coli strain EH41]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731