Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PARA_RS06080 Genome accession   NC_015964
Coordinates   1196371..1196841 (-) Length   156 a.a.
NCBI ID   WP_014064989.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae T3T1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1191371..1201841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARA_RS06050 (PARA_11960) - 1192131..1192637 (-) 507 WP_011271841.1 integrating conjugative element protein -
  PARA_RS06055 (PARA_11970) - 1192653..1193411 (-) 759 WP_014064984.1 transglycosylase SLT domain-containing protein -
  PARA_RS06060 (PARA_11980) - 1193390..1194130 (-) 741 WP_014064985.1 TIGR03759 family integrating conjugative element protein -
  PARA_RS06065 (PARA_11990) - 1194135..1194761 (-) 627 WP_014064986.1 lipoprotein -
  PARA_RS06070 (PARA_12000) - 1194860..1195534 (-) 675 WP_231844648.1 TraX family protein -
  PARA_RS06075 (PARA_12010) - 1195682..1196278 (-) 597 WP_014064988.1 hypothetical protein -
  PARA_RS06080 (PARA_12020) radC 1196371..1196841 (-) 471 WP_014064989.1 JAB domain-containing protein Machinery gene
  PARA_RS06085 (PARA_12030) - 1196981..1197622 (-) 642 WP_014064990.1 DUF3560 domain-containing protein -
  PARA_RS06090 (PARA_12040) - 1197730..1198164 (-) 435 WP_014064991.1 STY4534 family ICE replication protein -
  PARA_RS06095 (PARA_12070) - 1199012..1199458 (-) 447 WP_014064992.1 type II toxin-antitoxin system VapC family toxin -
  PARA_RS06100 (PARA_12080) - 1199451..1200581 (-) 1131 WP_014064993.1 AAA family ATPase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17815.60 Da        Isoelectric Point: 5.9967

>NTDB_id=34398 PARA_RS06080 WP_014064989.1 1196371..1196841(-) (radC) [Haemophilus parainfluenzae T3T1]
MFKLNEQQQAILEQAQVILTKVMEEKPFYQGAQEFTAPSIAKLYFQTIIGNEERENFVVLFLDRIHRLIKSEVMFQGSVS
EISVSIREIIRQALKLNASAIIIGHNHPTGNVEPSDADKYITKRLKEACELMEIKLLDHFIVSGSASFCFTDNHLM

Nucleotide


Download         Length: 471 bp        

>NTDB_id=34398 PARA_RS06080 WP_014064989.1 1196371..1196841(-) (radC) [Haemophilus parainfluenzae T3T1]
ATGTTTAAATTAAACGAGCAACAACAAGCTATTTTAGAACAGGCACAGGTTATTTTAACTAAAGTGATGGAAGAAAAGCC
CTTTTACCAAGGTGCGCAGGAATTTACTGCTCCATCAATAGCTAAACTCTATTTTCAAACCATTATAGGTAATGAAGAAA
GAGAAAATTTCGTGGTACTTTTCTTGGATAGAATCCACAGATTGATTAAATCTGAGGTGATGTTTCAAGGATCTGTTTCA
GAAATTTCTGTGTCGATTCGGGAGATTATTCGACAGGCATTAAAGCTAAATGCATCAGCAATTATCATTGGGCACAATCA
TCCAACTGGAAATGTTGAGCCTAGTGATGCTGATAAATATATAACCAAGAGATTAAAGGAAGCTTGTGAATTAATGGAAA
TTAAATTACTTGATCACTTTATCGTTTCTGGTTCTGCGTCTTTTTGCTTTACTGATAATCATCTTATGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.333

96.154

0.436

Multiple sequence alignment