Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EPB54_RS14305 Genome accession   NZ_CP035701
Coordinates   2851218..2851736 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain 2012AW-0154     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2846218..2856736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB54_RS14280 rimM 2846326..2846874 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  EPB54_RS14285 rpsP 2846903..2847151 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  EPB54_RS14290 ffh 2847361..2848743 (-) 1383 WP_005462555.1 signal recognition particle protein -
  EPB54_RS14295 - 2848956..2849750 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  EPB54_RS14300 - 2849876..2851156 (+) 1281 WP_005462557.1 CNNM domain-containing protein -
  EPB54_RS14305 luxS 2851218..2851736 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  EPB54_RS14310 - 2851803..2852408 (-) 606 WP_015297256.1 hypothetical protein -
  EPB54_RS14315 gshA 2852433..2854001 (-) 1569 WP_015297257.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=343962 EPB54_RS14305 WP_005462534.1 2851218..2851736(-) (luxS) [Vibrio parahaemolyticus strain 2012AW-0154]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=343962 EPB54_RS14305 WP_005462534.1 2851218..2851736(-) (luxS) [Vibrio parahaemolyticus strain 2012AW-0154]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTCAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment