Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SDEG_RS07050 Genome accession   NC_012891
Coordinates   1390574..1392376 (-) Length   600 a.a.
NCBI ID   WP_012767253.1    Uniprot ID   A0AB38XZI0
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1385574..1397376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS07025 (SDEG_1433) - 1386240..1386947 (-) 708 WP_012767251.1 O-methyltransferase -
  SDEG_RS07030 (SDEG_1434) - 1386999..1388210 (-) 1212 WP_003055587.1 L-lactate MFS transporter -
  SDEG_RS07035 (SDEG_1435) - 1388544..1389167 (-) 624 WP_003055586.1 HAD-IA family hydrolase -
  SDEG_RS07040 (SDEG_1436) - 1389167..1389709 (-) 543 WP_003055595.1 GNAT family N-acetyltransferase -
  SDEG_RS07045 (SDEG_1437) - 1389839..1390387 (-) 549 WP_037587517.1 NADPH-dependent FMN reductase -
  SDEG_RS07050 (SDEG_1438) pepF 1390574..1392376 (-) 1803 WP_012767253.1 oligoendopeptidase F Regulator
  SDEG_RS07055 (SDEG_1439) - 1392387..1393349 (-) 963 WP_003056374.1 competence protein CoiA -
  SDEG_RS07060 (SDEG_1440) - 1393461..1394620 (-) 1160 Protein_1356 MFS transporter -
  SDEG_RS07070 (SDEG_1442) - 1394712..1395428 (-) 717 WP_003056372.1 pseudouridine synthase -
  SDEG_RS07075 (SDEG_1443) nagB 1395532..1396245 (-) 714 WP_003056370.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69091.84 Da        Isoelectric Point: 4.7065

>NTDB_id=34395 SDEG_RS07050 WP_012767253.1 1390574..1392376(-) (pepF) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MTDNRSHLEEKYTWDLSTIFATDKDWEAEVSGLASEIDAAKDFSGHLLDSSANLLTITDTYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMALSQEDYQAFLAETPDLKRYHHFFDKLFQTRDHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPVVKNDKGEDVELTHGNFISLMESKDRSVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYDSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLKLRQDVLGLDELKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYADLNEKYYGLSKDDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLAGKIVHGTQDDIDHYLTYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLTELEALVAKGVHH

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=34395 SDEG_RS07050 WP_012767253.1 1390574..1392376(-) (pepF) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGACAGATAATCGTAGTCATTTAGAAGAAAAGTACACTTGGGATTTGAGCACCATTTTTGCAACAGATAAGGATTGGGA
AGCTGAAGTCAGTGGCTTAGCTAGTGAAATTGACGCGGCTAAGGATTTTTCAGGTCATTTACTAGATTCTAGCGCTAATC
TGTTGACAATTACAGACACTTATTTAGAGTTAGCTCGTCGTGTTGAGAAAGTCTATGTCTATGCTCATATGAAAAATGAT
CAAGACACGACTGTTGCTAAATATCAAGAATATCAGGCTAAGGCTTCTGGCTTGTATGCTAAATTTAGCGAAGTGTTTTC
ATTCTATGACCCAGAAGTTATGGCATTGAGTCAGGAAGATTACCAAGCTTTTCTTGCGGAAACTCCTGATTTAAAAAGGT
ATCATCATTTCTTTGACAAATTGTTCCAGACACGTGACCATGTGCTTAGCCAGGCTGAAGAGGAATTATTAGCAGGAGCC
CAAGAAATTTTCAATGGCGCTGAAGAAACCTTTAGCATTCTGGATAACGCTGATATTGTCTTTCCAGTAGTTAAAAATGA
TAAGGGGGAAGATGTTGAATTAACCCATGGTAACTTTATCAGTTTAATGGAATCTAAAGATCGTAGCGTTCGCCAAGCTG
CTTACGAGGCAATGTATAGCACTTATGAACAGTTCCAACACACTTATGCTAAAACCTTACAAACAAATGTTAAGGTTCAA
AATTACAAGGCGCGTGTTCATAAATACGATTCAGCACGTCAAGCTGCCATGGCTGCTAACTTTATTCCAGAAGCTGTTTA
CGACACTTTATTAGAAACGGTTAACAAACATTTACCACTTTTACACCGTTACTTGAAACTTCGCCAAGATGTTCTTGGTC
TAGATGAGTTGAAGATGTATGATGTTTACACACCATTATCTGAAACAGACCTAGCCATTGGTTATGATGAGGCTTTGGAA
AAAGCTGAGAAGGTTTTGGCTGTTTTTGGTAAGGATTATGCAGACCGAGTGCATCGTGCCTTTACAGAACGTTGGATTGA
TGTTCATGTCAATAAAGGGAAGCGCTCTGGAGCTTATTCGGGTGGTTCCTACGACACCAATGCCTTTATGCTATTAAACT
GGCAAGATACCTTAGACAATCTATACACTTTAGTTCATGAAACTGGGCACAGTTTGCATTCTACTTTCACTCGTGAAACA
CAGCCTTATGTGTATGGAGATTACAGTATTTTCCTAGCAGAAATTGCATCCACAACTAATGAAAACATCATGACAGAAGC
TCTCTTAAATGAGGTTCAAGATGAGAAAGAACGCTTTGCTATTTTAAACCATTACCTTGACGGTTTCCGTGGCACTGTTT
TCCGTCAAACCCAATTTGCTGAGTTTGAACACGCAATCCATCAAGCTGATCAAAAAGGAGAAGTGTTAACGAGCGAATAC
CTCAACCAATTGTATGCTGATTTGAATGAAAAGTATTATGGGTTGAGTAAAGACGATAATCATTTTATTCAATATGAGTG
GGCACGTATTCCTCACTTCTATTATAATTATTATGTTTATCAGTATGCTACAGGCTTTGCAGCAGCAAGTTATTTAGCCG
GTAAGATTGTTCACGGAACGCAAGACGATATTGATCATTACTTGACCTACCTCAAGTCAGGAAATTCTGACTACCCACTT
GAGGTCATCGCTAAAGCGGGTGTTGATATGGCAAAAGGTGACTATCTTGAAGCAGCCTTTAAAGTCTTCGAAGAACGTCT
AACAGAACTTGAAGCCCTTGTTGCAAAAGGAGTTCATCACTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.953

99.833

0.718

Multiple sequence alignment