Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxS   Type   Regulator
Locus tag   EPB57_RS20800 Genome accession   NZ_CP035700
Coordinates   2645150..2645668 (+) Length   172 a.a.
NCBI ID   WP_017820391.1    Uniprot ID   A0A2I3C9Z1
Organism   Vibrio alginolyticus strain 2013V-1302     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 2640150..2650668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB57_RS20790 gshA 2642868..2644436 (+) 1569 WP_054574812.1 glutamate--cysteine ligase -
  EPB57_RS20795 - 2644460..2645065 (+) 606 WP_195723072.1 hypothetical protein -
  EPB57_RS20800 luxS 2645150..2645668 (+) 519 WP_017820391.1 S-ribosylhomocysteine lyase Regulator
  EPB57_RS20805 - 2645737..2647017 (-) 1281 WP_005379948.1 CNNM domain-containing protein -
  EPB57_RS20810 - 2647142..2647936 (-) 795 WP_005379950.1 inner membrane protein YpjD -
  EPB57_RS20815 ffh 2648161..2649543 (+) 1383 WP_005385423.1 signal recognition particle protein -
  EPB57_RS20820 rpsP 2649753..2650001 (+) 249 WP_005379962.1 30S ribosomal protein S16 -
  EPB57_RS20825 rimM 2650031..2650579 (+) 549 WP_154205047.1 ribosome maturation factor RimM -

Sequence


Protein


Download         Length: 172 a.a.        Molecular weight: 19074.83 Da        Isoelectric Point: 4.8443

>NTDB_id=343934 EPB57_RS20800 WP_017820391.1 2645150..2645668(+) (luxS) [Vibrio alginolyticus strain 2013V-1302]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=343934 EPB57_RS20800 WP_017820391.1 2645150..2645668(+) (luxS) [Vibrio alginolyticus strain 2013V-1302]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAATGCACCGGCAGTGCGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGTCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGACGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains


Predicted by InterproScan.

(4-154)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2I3C9Z1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866


Multiple sequence alignment