Detailed information NTG0343931

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EPB57_RS20660
• Genome accession: NZ_CP035700
• Coordinates: 2621901..2622887 (+)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain 2013V-1302
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2616901..2627887

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB57_RS20625	ftsB	2616911..2617192 (+)	282	WP_005380907.1	cell division protein FtsB	-
EPB57_RS20630	ispD	2617194..2617901 (+)	708	WP_154205035.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EPB57_RS20635	ispF	2617916..2618392 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EPB57_RS20640	truD	2618438..2619481 (+)	1044	WP_154205036.1	tRNA pseudouridine(13) synthase TruD	-
EPB57_RS20645	surE	2619481..2620257 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
EPB57_RS20650	-	2620257..2620883 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EPB57_RS20655	nlpD	2620897..2621820 (+)	924	WP_154205037.1	murein hydrolase activator NlpD	-
EPB57_RS20660	rpoS	2621901..2622887 (+)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
EPB57_RS20665	mutS	2622970..2625531 (-)	2562	WP_154205038.1	DNA mismatch repair protein MutS	-
EPB57_RS20670	pncC	2625616..2626098 (+)	483	WP_154205039.1	nicotinamide-nucleotide amidase	-
EPB57_RS20675	recA	2626299..2627342 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=343931 EPB57_RS20660 WP_005380887.1 2621901..2622887(+) (rpoS) [Vibrio alginolyticus strain 2013V-1302]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=343931 EPB57_RS20660 WP_005380887.1 2621901..2622887(+) (rpoS) [Vibrio alginolyticus strain 2013V-1302]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854