Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PARA_RS04860 Genome accession   NC_015964
Coordinates   961323..961925 (+) Length   200 a.a.
NCBI ID   WP_005696838.1    Uniprot ID   A0ABP2NW55
Organism   Haemophilus parainfluenzae T3T1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 956323..966925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARA_RS04840 (PARA_09600) - 957015..958253 (+) 1239 WP_014064792.1 HAAAP family serine/threonine permease -
  PARA_RS04845 (PARA_09610) - 958289..959659 (+) 1371 WP_014064793.1 L-serine ammonia-lyase -
  PARA_RS04850 (PARA_09620) - 959705..960796 (-) 1092 WP_014064794.1 metallophosphoesterase -
  PARA_RS04855 (PARA_09630) - 960932..961261 (+) 330 WP_005696839.1 YbaB/EbfC family nucleoid-associated protein -
  PARA_RS04860 (PARA_09640) recR 961323..961925 (+) 603 WP_005696838.1 recombination mediator RecR Machinery gene
  PARA_RS04865 (PARA_09650) - 961930..963873 (+) 1944 WP_014064795.1 DNA topoisomerase III -
  PARA_RS04870 (PARA_09660) secG 963990..964337 (+) 348 WP_014064796.1 preprotein translocase subunit SecG -
  PARA_RS04880 (PARA_09670) - 964573..965994 (+) 1422 WP_014064797.1 sucrose-specific PTS transporter subunit IIBC -
  PARA_RS04885 (PARA_09680) - 966084..966551 (-) 468 WP_014064798.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22056.16 Da        Isoelectric Point: 6.3981

>NTDB_id=34392 PARA_RS04860 WP_005696838.1 961323..961925(+) (recR) [Haemophilus parainfluenzae T3T1]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEETCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEI
CHQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=34392 PARA_RS04860 WP_005696838.1 961323..961925(+) (recR) [Haemophilus parainfluenzae T3T1]
ATGCAAAGCAGTCCACTTTTAGAACATCTTATTGAAAACCTTCGTTGCTTGCCGGGTGTTGGCCCGAAATCAGCGCAGCG
CATGGCTTATCATCTCTTACAGCGCAATCGTAGCGGTGGGATGAATTTAGCACGTGCATTAACGGAAGCGATGTCTAAAA
TTGGGCATTGTTCACAGTGTCGTGATTTTACCGAAGAGGAAACGTGCAATATTTGTAACAATCCTCGCCGTCAAAATTCA
GGTTTGCTTTGCGTGGTGGAAATGCCGGCGGATATTCAGGCTATTGAGCAAACAGGCCAATTTTCTGGGCGTTATTTTGT
CTTAATGGGGCACTTATCGCCTTTAGATGGTATTGGCCCAAAAGAGATTGGTTTAGATTTATTGCAAAAACGTCTGGTAG
AAGAATCTTTCCACGAAGTGATTTTAGCGACCAATCCAACGGTGGAAGGCGATGCCACAGCCAATTATATTGCGGAAATT
TGCCATCAACATAATATTAAAGTGAGTCGTATTGCTCACGGGATCCCTGTCGGTGGGGAATTAGAAACCGTGGACGGCAC
CACCTTAACCCATTCTTTCTTAGGTCGTCGTCAGATCGACTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

99.5

0.435
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.719

99.5

0.435

Multiple sequence alignment