Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EPB57_RS16500 Genome accession   NZ_CP035700
Coordinates   1776007..1777035 (+) Length   342 a.a.
NCBI ID   WP_254901949.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2013V-1302     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1771007..1782035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB57_RS16475 rplC 1771570..1772199 (-) 630 WP_005379555.1 50S ribosomal protein L3 -
  EPB57_RS16480 rpsJ 1772214..1772525 (-) 312 WP_004410492.1 30S ribosomal protein S10 -
  EPB57_RS16485 rpmE 1772981..1773202 (-) 222 WP_005379546.1 50S ribosomal protein L31 -
  EPB57_RS16495 priA 1773499..1775703 (+) 2205 WP_154204878.1 primosomal protein N' -
  EPB57_RS16500 cytR 1776007..1777035 (+) 1029 WP_254901949.1 DNA-binding transcriptional regulator CytR Regulator
  EPB57_RS16505 ftsN 1777261..1777809 (+) 549 WP_017820300.1 cell division protein FtsN -
  EPB57_RS16510 hslV 1777925..1778476 (+) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  EPB57_RS16515 hslU 1778500..1779831 (+) 1332 WP_047101881.1 HslU--HslV peptidase ATPase subunit -
  EPB57_RS16520 - 1780792..1781709 (+) 918 WP_154204879.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37765.46 Da        Isoelectric Point: 6.4948

>NTDB_id=343911 EPB57_RS16500 WP_254901949.1 1776007..1777035(+) (cytR) [Vibrio alginolyticus strain 2013V-1302]
MNERLKTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPY
FSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELEL
PTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLE
LPEPPTAIFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVH
SGSRLLETNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=343911 EPB57_RS16500 WP_254901949.1 1776007..1777035(+) (cytR) [Vibrio alginolyticus strain 2013V-1302]
ATAAATGAGAGGTTAAAAACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCG
AGCCTTAATGAATCCAGAGAAAGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTC
CAAACTCATTAGCGCGTAACTTACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTAT
TTTTCTGAAATTATTCGCGGTATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACA
GAAGAAACGCGAAAGCTCTTTCGTTAACCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTAC
CATTCGATGTCAGTAAGCCAGAGCAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTT
CCGACAGTACATATTGATAACCTGACCTCTGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAACGCATTGC
TCAAATCTCTGGACCAGATACAGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCA
TCAATAAAGATCCACAATATAGTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAA
TTGCCAGAACCACCAACGGCTATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGG
CTTACGAGTACCGCAAGATCTCTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCCCCGTTGACCA
CCATCTCTCAACCTCGCTATGAGATTGGTCGACAAGCGATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCAT
TCAGGCTCGCGTCTGCTTGAAACTAATCTCGTCATTCGTGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-335)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.935

99.123

0.971
  cytR Vibrio cholerae C6706

89.521

97.661

0.874

Multiple sequence alignment