Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   EPB57_RS05775 Genome accession   NZ_CP035699
Coordinates   1272447..1273544 (+) Length   365 a.a.
NCBI ID   WP_104980502.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2013V-1302     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1267447..1278544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB57_RS05750 - 1268768..1270105 (-) 1338 WP_005385628.1 MATE family efflux transporter -
  EPB57_RS05755 - 1270227..1270541 (-) 315 WP_005373603.1 DUF496 family protein -
  EPB57_RS05760 - 1270783..1270986 (+) 204 WP_031777159.1 hypothetical protein -
  EPB57_RS05765 - 1271152..1271802 (+) 651 WP_005373594.1 YceH family protein -
  EPB57_RS05770 - 1271799..1272116 (+) 318 WP_005373593.1 GIY-YIG nuclease family protein -
  EPB57_RS05775 luxP 1272447..1273544 (+) 1098 WP_104980502.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  EPB57_RS05780 luxQ 1273544..1276119 (+) 2576 Protein_1127 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  EPB57_RS05785 slyA 1276415..1276870 (+) 456 WP_017635177.1 transcriptional regulator SlyA -
  EPB57_RS05790 - 1276906..1277964 (+) 1059 WP_065275182.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41617.07 Da        Isoelectric Point: 5.9503

>NTDB_id=343895 EPB57_RS05775 WP_104980502.1 1272447..1273544(+) (luxP) [Vibrio alginolyticus strain 2013V-1302]
MKKALVFSLISMAAFTPNVQATQVLNGYWAYQEFLDQFPQQKQLTSALAEVVRETPVPVAKDKKRPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLDIDYQLNQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSKKTKLILQNI
TTPVRDWEHHQPFLYVGFDHAEGSRELAVEFGKRFPKHSHYSVLYFSEGYISDIRGNTFINQVNRDNQFELQSAYYTKAT
KQSGYEAAKASLEKYPDVDFIYACSTDVALGAVDALKELGRDDVMINGWGGGSAELEALSKGELDVTVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=343895 EPB57_RS05775 WP_104980502.1 1272447..1273544(+) (luxP) [Vibrio alginolyticus strain 2013V-1302]
ATGAAAAAAGCGTTAGTATTCTCCCTGATTTCAATGGCCGCTTTTACGCCGAATGTGCAGGCCACCCAAGTTCTTAATGG
GTATTGGGCATATCAAGAATTTTTAGACCAGTTTCCACAACAGAAGCAGCTAACTAGTGCGTTGGCTGAAGTGGTAAGAG
AAACCCCTGTACCCGTAGCAAAAGACAAAAAGCGTCCACTGAAAATTTCTGTTGTTTATCCAGGGCAGCAGATCTCTGAT
TATTGGATTCGAAACATCGATGCGTTTGAAAAACGCCTAGATAAGCTTGATATCGACTATCAACTAAATCAAGTGTTTAC
TCGTCCTAATGCAGATATAAAGCAGCAAAGTTTGTCTTTAATGGAGGCGCTGAAAAGCAACTCCGATTACTTGATCTTTA
CTCTAGATACCACAAGACATCGTAAGTTTGTTGAGCATGTCTTAGATTCAAAGAAAACCAAGTTAATTTTACAAAATATC
ACCACACCTGTTAGGGATTGGGAACATCATCAGCCGTTTCTTTATGTTGGTTTCGACCACGCAGAAGGAAGTCGTGAATT
GGCCGTTGAGTTTGGCAAGCGTTTCCCTAAACATAGCCACTATAGTGTTCTCTATTTCTCGGAGGGCTACATTAGTGACA
TCAGAGGCAACACTTTTATCAACCAAGTGAACCGCGATAACCAGTTTGAACTACAATCTGCTTACTACACCAAAGCAACA
AAGCAATCTGGGTATGAAGCGGCAAAAGCCAGTTTGGAGAAGTATCCGGACGTTGATTTCATTTACGCGTGTTCTACCGA
TGTAGCATTAGGTGCTGTTGACGCTCTTAAAGAGTTAGGTCGTGACGATGTAATGATCAATGGTTGGGGCGGCGGTTCAG
CAGAGTTAGAGGCGCTTTCTAAAGGGGAGTTAGACGTTACCGTTATGCGTATGAACGATGATACAGGTATTGCAATGGCT
GAGGCCATTAAGTGGGATTTAGAAGGAAAGCCAGTTCCCACCGTTTACTCTGGTGATTTTGAAGTCGTTACCAAATCGGA
CTCTCCAGAAAGAATTGAAGCATTAAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644

Multiple sequence alignment