Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ET948_RS01515 Genome accession   NZ_CP035697
Coordinates   338883..339401 (-) Length   172 a.a.
NCBI ID   WP_154114811.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2409-02     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 333883..344401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET948_RS01490 rimM 334037..334591 (-) 555 WP_078925564.1 ribosome maturation factor RimM -
  ET948_RS01495 rpsP 334610..334858 (-) 249 WP_078925563.1 30S ribosomal protein S16 -
  ET948_RS01500 ffh 335114..336490 (-) 1377 WP_078925562.1 signal recognition particle protein -
  ET948_RS01505 - 336702..337496 (+) 795 WP_078925561.1 inner membrane protein YpjD -
  ET948_RS01510 - 337545..338822 (+) 1278 WP_078925560.1 HlyC/CorC family transporter -
  ET948_RS01515 luxS 338883..339401 (-) 519 WP_154114811.1 S-ribosylhomocysteine lyase Regulator
  ET948_RS01520 gshA 339515..341083 (-) 1569 WP_154114812.1 glutamate--cysteine ligase -
  ET948_RS01525 - 341304..344156 (-) 2853 WP_154114813.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19066.94 Da        Isoelectric Point: 5.2188

>NTDB_id=343853 ET948_RS01515 WP_154114811.1 338883..339401(-) (luxS) [Vibrio cincinnatiensis strain 2409-02]
MPLLDSFTVDHTRMQAPAVRVAKTMQTPKGDTITVFDLRFTLPNKAILSEKGIHTLEHLYAGFMRDHLNSDIVEIIDISP
MGCRTGFYMSLIGTPSEEQVAHAWLAAMNDVLKVESQDKIPELNEYQCGTAAMHSLSEAKAIAQQVIQSGIRVNKNDELA
LPEAMLQSLKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=343853 ET948_RS01515 WP_154114811.1 338883..339401(-) (luxS) [Vibrio cincinnatiensis strain 2409-02]
ATGCCATTACTAGACAGTTTTACGGTTGACCATACTCGTATGCAGGCTCCTGCAGTGCGAGTAGCTAAGACAATGCAAAC
CCCCAAAGGTGATACGATTACGGTGTTTGATTTACGTTTTACGTTACCCAATAAAGCGATTTTATCTGAAAAAGGGATTC
ACACGCTGGAGCATTTATATGCCGGATTCATGCGCGACCACCTCAATAGCGATATTGTAGAAATTATTGATATTTCTCCA
ATGGGGTGCCGAACGGGTTTTTATATGAGCTTAATTGGTACACCGAGTGAAGAGCAGGTTGCCCATGCCTGGCTCGCCGC
AATGAATGATGTGCTTAAGGTGGAAAGCCAAGATAAGATTCCTGAGTTAAATGAGTACCAATGTGGCACGGCCGCTATGC
ATTCTTTATCGGAAGCAAAAGCGATCGCCCAACAAGTTATTCAGTCTGGAATTCGAGTGAATAAAAATGACGAGTTGGCT
CTACCTGAAGCTATGCTTCAGTCATTAAAAGTCGATTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849

Multiple sequence alignment