Detailed information NTG0343849

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: EPB61_RS20710
• Genome accession: NZ_CP035696
• Coordinates: 2808310..2809731 (-)
• Length: 473 a.a.
• NCBI ID: WP_154181068.1
• Uniprot ID: -
• Organism: Vibrio furnissii strain 2419-04
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2803310..2814731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB61_RS20690	-	2803332..2806037 (+)	2706	WP_154181066.1	EAL domain-containing protein	-
EPB61_RS20695	cdd	2806128..2807015 (-)	888	WP_014205226.1	cytidine deaminase	-
EPB61_RS20700	-	2807224..2807904 (-)	681	WP_154181067.1	LrgB family protein	-
EPB61_RS20705	-	2807895..2808269 (-)	375	WP_004726196.1	CidA/LrgA family protein	-
EPB61_RS20710	sbcB	2808310..2809731 (-)	1422	WP_154181068.1	exodeoxyribonuclease I	Machinery gene
EPB61_RS20715	-	2809730..2810392 (+)	663	WP_154181069.1	site-specific integrase	-
EPB61_RS23880	-	2810536..2810769 (+)	234	Protein_2536	site-specific integrase	-
EPB61_RS20720	-	2810858..2811133 (+)	276	WP_338324207.1	helix-turn-helix domain-containing protein	-
EPB61_RS20725	-	2811114..2812031 (-)	918	WP_154181070.1	hypothetical protein	-
EPB61_RS20730	-	2812390..2813205 (+)	816	WP_154181071.1	nucleotide-binding protein	-
EPB61_RS20735	-	2813227..2813844 (+)	618	WP_154181072.1	hypothetical protein	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54330.69 Da
• Isoelectric Point: 4.8928

>NTDB_id=343849 EPB61_RS20710 WP_154181068.1 2808310..2809731(-) (sbcB) [Vibrio furnissii strain 2419-04]
MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGIIPQKAMAQGLPEPE
FIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTS
FKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYT
SWIVPIAWHPTNQNAVIVVDLAKDPQPLLDLDAESLHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKR
IEPLLFRYRARNFPWTLDDEEQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=343849 EPB61_RS20710 WP_154181068.1 2808310..2809731(-) (sbcB) [Vibrio furnissii strain 2419-04]
ATGCAGCAACAGCAGCCCACTTATTTTTTCTTTGACTATGAGACGTGGGGCACCAGCCCGGCCAAAGACCGTCCGAGTCA
GTTTGCTGGTGTGCGCACAGACATGGAGTTCAATATCATCGGTGAGCCGTTGGTGATTTACTGCCAATTGCCATCGGATT
ACCTGCCGGCGCCAGAAGCCGCGCTGATTACTGGCATCATTCCGCAAAAAGCGATGGCGCAAGGGCTGCCTGAACCCGAA
TTCATCGCCAAAATTCACGCCGAGTTATCGACACCAAACACCACAAGCCTTGGGTACAACAGCATTCGTTTTGATGATGA
AGTCACCCGCTACACCTGTTATCGCAACTTCCTTGATCCGTATGCTTGGAGCTGGCAAAACGGCAACTCCCGCTGGGATT
TACTGGATGTGATGCGTGCATGCCACGCATTGCGCCCGGAAGGTGTGGTGTGGCCAGAAAACGACGAAGGGTTTACCAGC
TTTAAGCTGGAACATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCGCACGATGCGATGGCGGATGTGATTGCGAC
GATTGAACTGGCGAAAAAAGTCAAAGCGGCGCAACCCAAGCTGTTTGAATATTTCTTCTCGATGCGTCATAAACGCAAGC
TCAATGAGCTGATTGATATTGTCAACATGACGCCGCTGATGCATGTCTCTGGCATGCTGGGCCGTGAATGCCAATACACC
AGTTGGATTGTGCCGATTGCTTGGCACCCGACCAACCAAAACGCGGTCATTGTGGTGGATTTGGCCAAAGATCCACAACC
GCTGCTCGATTTAGATGCGGAATCACTGCACGCGCGTTTATACACTCGTCATGACGATTTAGCGCCGGATGAATTGCCTG
TGCCCGTCAAGCTGGTTCATCTCAACAAGTGTCCGATTCTAGCCCCGGCGAAAACGCTCACCGCCGAAAATGCCGCCACC
ATCGGCATCGACCGCGAACTGTGCTTGGCCAACTTGGCACGCATTCGTCAGTCTCCCGATATTCGCGAAAAACTGGCGGC
GCTGTTTAGCATTGAGCGCGAATTTGAAGCCTCGAACGATGTGGATACGCAGCTCTATGACGGGTTCTTCTCCCCTGCAG
ATAAAGCCGCGATGGAAATTATTCGTTCCACGAATCCTGAACTGCTCGGCGAGTTGGATATCACGTTCAGCGACAAACGC
ATTGAACCCCTGCTGTTTCGTTACCGCGCGCGCAACTTCCCGTGGACGCTCGACGACGAAGAGCAACGCCGCTGGGCGAA
CCATTGTCGCGATTACTACGAAACACATCTGCCTGATTACATGCTGAACCTGGAAAATCTGGTGCATGAACATGAAAGTG
ATGAAAAGAAAATCGCGATTCTCAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (10-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (209-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	83.652	99.577	0.833