Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GBG22_RS09150 Genome accession   NZ_CP045206
Coordinates   1900867..1902294 (-) Length   475 a.a.
NCBI ID   WP_072198855.1    Uniprot ID   -
Organism   Escherichia coli strain DE17     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1895867..1907294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBG22_RS09120 (GBG22_09255) yeeZ 1895922..1896746 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  GBG22_RS09125 (GBG22_09260) yeeY 1896792..1897721 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GBG22_RS09130 (GBG22_09265) yoeI 1897936..1897998 (+) 63 WP_010723108.1 membrane protein YoeI -
  GBG22_RS09135 (GBG22_09270) plaP 1897988..1899346 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GBG22_RS09140 (GBG22_09275) tsuA 1899525..1900583 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  GBG22_RS09145 (GBG22_09280) tsuB 1900597..1900824 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GBG22_RS09150 (GBG22_09285) sbcB 1900867..1902294 (-) 1428 WP_072198855.1 exodeoxyribonuclease I Machinery gene
  GBG22_RS09155 (GBG22_09290) dacD 1902503..1903669 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GBG22_RS09160 (GBG22_09295) sbmC 1903788..1904261 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  GBG22_RS09165 (GBG22_09300) yeeA 1904459..1905517 (+) 1059 WP_001200891.1 FUSC family protein -
  GBG22_RS09170 (GBG22_09305) tmaR 1905689..1906018 (+) 330 WP_039267629.1 DUF496 family protein -
  GBG22_RS25555 (GBG22_09310) - 1906119..1906301 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  GBG22_RS25705 (GBG22_09315) - 1906373..1906501 (+) 129 Protein_1816 transposase domain-containing protein -
  GBG22_RS09185 (GBG22_09320) - 1906790..1906882 (-) 93 Protein_1817 DUF957 domain-containing protein -
  GBG22_RS09190 (GBG22_09325) yeeW 1906916..1907110 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.80 Da        Isoelectric Point: 5.6070

>NTDB_id=343845 GBG22_RS09150 WP_072198855.1 1900867..1902294(-) (sbcB) [Escherichia coli strain DE17]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=343845 GBG22_RS09150 WP_072198855.1 1900867..1902294(-) (sbcB) [Escherichia coli strain DE17]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579

Multiple sequence alignment