Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   EPB61_RS18405 Genome accession   NZ_CP035696
Coordinates   2319170..2320531 (+) Length   453 a.a.
NCBI ID   WP_086027297.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2419-04     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2314170..2325531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB61_RS18390 - 2314781..2316013 (-) 1233 WP_154180901.1 integrase domain-containing protein -
  EPB61_RS18400 uvrB 2316853..2318883 (+) 2031 WP_004726644.1 excinuclease ABC subunit UvrB -
  EPB61_RS18405 luxO 2319170..2320531 (+) 1362 WP_086027297.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EPB61_RS18410 luxU 2320538..2320876 (+) 339 WP_004726642.1 quorum-sensing phosphorelay protein LuxU -
  EPB61_RS18415 - 2320865..2321755 (-) 891 WP_154180902.1 YvcK family protein -
  EPB61_RS18420 moaA 2322065..2323054 (+) 990 WP_195723457.1 GTP 3',8-cyclase MoaA -
  EPB61_RS18425 moaB 2323125..2323637 (+) 513 WP_004726639.1 molybdenum cofactor biosynthesis protein B -
  EPB61_RS18430 moaC 2323647..2324126 (+) 480 WP_154180904.1 cyclic pyranopterin monophosphate synthase MoaC -
  EPB61_RS18435 moaD 2324123..2324368 (+) 246 WP_004726637.1 molybdopterin synthase sulfur carrier subunit -
  EPB61_RS18440 moaE 2324370..2324825 (+) 456 WP_014205521.1 molybdopterin synthase catalytic subunit MoaE -
  EPB61_RS23565 - 2324884..2325123 (-) 240 WP_241669871.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50359.61 Da        Isoelectric Point: 5.7310

>NTDB_id=343842 EPB61_RS18405 WP_086027297.1 2319170..2320531(+) (luxO) [Vibrio furnissii strain 2419-04]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKANKLKNETDNPGNQNYQGFIGSSQTMLAVYRTIDSAATSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPDVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREIALTMLPPPLNQLSDSRINVPKASPAPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=343842 EPB61_RS18405 WP_086027297.1 2319170..2320531(+) (luxO) [Vibrio furnissii strain 2419-04]
ATGGTCGAAGATACGGCGTCGGTTGCGGCGTTGTATCGTTCGTACCTGACACCGCTCGAGATCGATATCAACATTGTCGG
AACGGGACGTGAAGCGATCGAGAGCATCGCCCATCGCGAGCCGGATCTGATCCTCCTCGATCTGCGCCTGCCAGACATGA
CGGGTATGGACGTGTTGCACGCGGTGAAACAGCGTTCACCGGATGTGCCGGTGATTTTTATGACGGCTCACGGCTCCATT
GATACCGCCGTCGAAGCCATGCGCCACGGCGCGCAAGATTTCCTCATCAAACCGTGCGAAGCCGACCGTTTGCGTGTGAC
GGTCAACAACGCCATTCGCAAGGCAAACAAACTCAAAAACGAGACCGACAATCCGGGTAATCAGAATTACCAAGGGTTCA
TTGGCAGCAGCCAGACCATGTTGGCGGTGTATCGCACTATCGACTCTGCGGCCACCAGTAAAGCGAGTATTTTCATTACC
GGCGAAAGTGGTACCGGCAAAGAGGTGTGCGCCGAAGCCATCCATGCGGCCAGCAAGCGCGGCGACAAGCCGTTCATTGC
CATTAACTGTGCGGCCATTCCCAAAGATCTGATTGAAAGTGAGCTGTTTGGTCACGTCAAAGGCGCGTTTACTGGCGCGG
CGACGGATCGTCAGGGCGCGGCAGAACTGGCCGATGGTGGCACCTTGTTCTTGGACGAGCTGTGTGAAATGGATTTGGAT
CTGCAAACCAAGCTGCTGCGCTTTATTCAGACCGGGACCTTCCAGAAAGTCGGATCGTCTAAAATGAAGAGTGTGGACGT
GCGTTTTGTGTGTGCGACCAACCGTGACCCTTGGAAAGAAGTGCAAGAAGGGCGTTTTCGTGAAGACTTGTATTACCGTC
TGTACGTGATTCCGTTGCATTTGCCCCCTTTGCGTGAGCGCGGCGATGATGTGATTGAAATCGCGTATTCACTACTAGGG
TACATGTCGAAAGAAGAAGGTAAAGGCTTTGTACGTTTGGCGCCAGATGTCGTGGAGCGCTTCAAACAGTACGAATGGCC
GGGGAACGTGCGCCAGCTGCAGAACGTGCTGCGCAACGTGGTGGTGCTTAATGAAGGGCGTGAAATTGCGCTGACAATGC
TGCCGCCACCGCTGAACCAATTGAGTGACTCACGCATCAATGTCCCGAAAGCCAGCCCGGCACCGGTGTCGGTGCATGAA
ATTTTCCCGTTATGGATGACAGAAAAGCAGGCGATCGAAAAAGCAATCGAGGCCTGTGATGGCAATATTCCGCGTGCTGC
GGGCTATTTGGATGTCAGTCCATCCACCATCTACCGCAAGCTGCAAACCTGGAATGAAAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

90.828

98.675

0.896

Multiple sequence alignment