Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EPB61_RS16425 Genome accession   NZ_CP035696
Coordinates   1878148..1878666 (+) Length   172 a.a.
NCBI ID   WP_014205765.1    Uniprot ID   A0A0Q2V091
Organism   Vibrio furnissii strain 2419-04     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1873148..1883666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB61_RS16415 gshA 1875950..1877515 (+) 1566 WP_154180765.1 glutamate--cysteine ligase -
  EPB61_RS16420 - 1877517..1878122 (+) 606 WP_044367718.1 hypothetical protein -
  EPB61_RS16425 luxS 1878148..1878666 (+) 519 WP_014205765.1 S-ribosylhomocysteine lyase Regulator
  EPB61_RS16430 - 1878773..1880047 (-) 1275 WP_004723872.1 HlyC/CorC family transporter -
  EPB61_RS16435 - 1880138..1880932 (-) 795 WP_004723874.1 inner membrane protein YpjD -
  EPB61_RS16440 ffh 1881145..1882524 (+) 1380 WP_004723876.1 signal recognition particle protein -
  EPB61_RS16445 rpsP 1882750..1882998 (+) 249 WP_004723879.1 30S ribosomal protein S16 -
  EPB61_RS16450 rimM 1883026..1883580 (+) 555 WP_004723882.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18856.59 Da        Isoelectric Point: 4.6766

>NTDB_id=343839 EPB61_RS16425 WP_014205765.1 1878148..1878666(+) (luxS) [Vibrio furnissii strain 2419-04]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLASMQDVLSVESQDQIPELNEYQCGTAAMHSLNEAKAIAETVIAAGIQVNKNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=343839 EPB61_RS16425 WP_014205765.1 1878148..1878666(+) (luxS) [Vibrio furnissii strain 2419-04]
ATGCCATTATTAGACAGTTTTACCGTCGACCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCGAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGATATTCTGTCCGAGAAAGGGATTC
ATACGCTGGAGCATCTGTACGCCGGCTTTATGCGCGCGCATCTGAACGGTGCGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTGATTGGTGCACCAAGCGAAGAGCAAGTCGCCGCCGCTTGGTTGGCGTC
GATGCAAGACGTATTGAGTGTCGAAAGCCAGGATCAAATTCCTGAGCTGAACGAATACCAGTGCGGCACCGCAGCGATGC
ACTCCCTGAATGAAGCCAAAGCGATTGCTGAAACCGTGATTGCCGCAGGCATTCAGGTCAACAAGAACGACGAACTGGCG
CTGCCCGAATCGATGCTCAATGAGCTGAAAGTGCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2V091

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913

Multiple sequence alignment