Detailed information NTG0343836

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EPB61_RS16305
• Genome accession: NZ_CP035696
• Coordinates: 1856203..1857192 (+)
• Length: 329 a.a.
• NCBI ID: WP_004723838.1
• Uniprot ID: A0A0Q2V080
• Organism: Vibrio furnissii strain 2419-04
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1851203..1862192

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB61_RS16270	ftsB	1851219..1851503 (+)	285	WP_004723824.1	cell division protein FtsB	-
EPB61_RS16275	ispD	1851500..1852213 (+)	714	WP_154180756.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EPB61_RS16280	ispF	1852263..1852739 (+)	477	WP_004723827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EPB61_RS16285	truD	1852771..1853817 (+)	1047	WP_004723830.1	tRNA pseudouridine(13) synthase TruD	-
EPB61_RS16290	surE	1853810..1854577 (+)	768	WP_154180757.1	5'/3'-nucleotidase SurE	-
EPB61_RS16295	-	1854570..1855196 (+)	627	WP_014205779.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EPB61_RS16300	nlpD	1855196..1856130 (+)	935	Protein_1656	murein hydrolase activator NlpD	-
EPB61_RS16305	rpoS	1856203..1857192 (+)	990	WP_004723838.1	RNA polymerase sigma factor RpoS	Regulator
EPB61_RS16310	mutS	1857261..1859822 (-)	2562	WP_004723840.1	DNA mismatch repair protein MutS	-
EPB61_RS16315	pncC	1859907..1860401 (+)	495	WP_154180758.1	nicotinamide-nucleotide amidase	-
EPB61_RS16320	recA	1860568..1861620 (+)	1053	WP_004723845.1	recombinase RecA	Machinery gene
EPB61_RS16325	recX	1861715..1862185 (+)	471	WP_154180759.1	recombination regulator RecX	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37741.44 Da
• Isoelectric Point: 4.4379

>NTDB_id=343836 EPB61_RS16305 WP_004723838.1 1856203..1857192(+) (rpoS) [Vibrio furnissii strain 2419-04]
MSISNTATKVEEFEFDSEAVNNAATDQELTTNDNDQSEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVEND

Nucleotide

• Length: 990 bp

>NTDB_id=343836 EPB61_RS16305 WP_004723838.1 1856203..1857192(+) (rpoS) [Vibrio furnissii strain 2419-04]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAGTTCGATTCAGAAGCCGTGAATAACGCGGCGACCGACCA
AGAACTGACTACCAACGATAATGACCAGTCTGAAGAGGTTCGTGAAGAGTTTGATGCTTCCACGAAAAGCCTCGATGCCA
CTCAGATGTATCTGAGTGAGATTGGTTTCTCACCCTTATTAACCGCCGAAGAAGAAGTGCTCTATGCTCGCCGCGCCTTG
CGTGGTGATGAGGCCGCGCGCAAACGCATGATCGAGAGCAACTTACGTCTGGTGGTCAAAATTTCTCGCCGTTATAGCAA
TCGGGGCTTGGCACTGCTTGACCTGATTGAAGAGGGCAACCTTGGCCTCATTCGTGCAGTAGAGAAATTCGACCCAGAAC
GCGGTTTCCGTTTTTCGACTTATGCTACCTGGTGGATTCGTCAGACCATTGAACGTGCCCTGATGAACCAGACTCGTACG
ATTCGTTTACCAATTCATGTGGTGAAAGAGCTGAACATCTACTTGCGTACTGCGCGTGAGCTGTCTCAGAAACTCGACCA
CGAGCCGACCGCGGAAGAAATTGCCGTGGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTCCGTCTGAATGAGC
GCATTAGCTCCGTCGATACGCCAATTGGCGGCGATGGTGACAAAGCTTTGCTCGATATCATTCCTGATATCAACAATTCC
GACCCTGAAGTCTCCACACAGGATGACGACATTCGTGATTCGCTGGTGGCTTGGCTCGATGAGCTCAACCCGAAACAGAA
AGAAGTGCTGGCCCGCCGTTTTGGCTTGTTAGGGTATGAACCATCAACACTGGAAGAAGTGGGCCGCGAGATCAATTTGA
CCCGTGAACGTGTGCGTCAAATTCAGGTGGAAGGTTTGCGCCGCCTAAGAGAAATCCTGATGAAACAGGGGTTGAACATG
GAATCGCTGTTTAATGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A0A0Q2V080

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	88.024	100	0.894