Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EPB61_RS12550 Genome accession   NZ_CP035696
Coordinates   1069434..1070441 (-) Length   335 a.a.
NCBI ID   WP_004728525.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2419-04     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1064434..1075441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB61_RS12525 rraA 1065073..1065603 (-) 531 WP_143680265.1 ribonuclease E activity regulator RraA -
  EPB61_RS12530 - 1065679..1066596 (-) 918 WP_014204315.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  EPB61_RS12535 hslU 1066690..1068021 (-) 1332 WP_004728528.1 HslU--HslV peptidase ATPase subunit -
  EPB61_RS12540 hslV 1068058..1068614 (-) 557 Protein_972 ATP-dependent protease subunit HslV -
  EPB61_RS12545 - 1068753..1069304 (-) 552 WP_038152602.1 SPOR domain-containing protein -
  EPB61_RS12550 cytR 1069434..1070441 (-) 1008 WP_004728525.1 DNA-binding transcriptional regulator CytR Regulator
  EPB61_RS12555 priA 1070749..1072950 (-) 2202 WP_143680264.1 primosomal protein N' -
  EPB61_RS12560 rpmE 1073197..1073415 (+) 219 WP_004728523.1 50S ribosomal protein L31 -
  EPB61_RS12565 - 1073626..1074900 (+) 1275 WP_004728522.1 malic enzyme-like NAD(P)-binding protein -
  EPB61_RS12570 metJ 1074977..1075294 (-) 318 WP_004728521.1 met regulon transcriptional regulator MetJ -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36886.40 Da        Isoelectric Point: 6.3510

>NTDB_id=343823 EPB61_RS12550 WP_004728525.1 1069434..1070441(-) (cytR) [Vibrio furnissii strain 2419-04]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQIAGPEAAVLCQFRQQGYQQALRRAGISRNPTYSTIGDFTFESGAKAVRQLMALPEPPTA
IFCHNDTMAIGAIQEAKRLGMRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLD
TQLVIRESAAPPRSA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=343823 EPB61_RS12550 WP_004728525.1 1069434..1070441(-) (cytR) [Vibrio furnissii strain 2419-04]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTATCGACGGCGACAGTCTCGCGCGCTCTGATGAATCCCGAGAA
AGTTTCAGCCTCAACTCGTAAACGGGTTGAAGAGGCGGTTTTAGAAGCTGGCTATTCACCGAATTCTTTAGCCCGAAATC
TGCGTCGCAATGAATCGAAAACCATTGTCGCGATCGTGCCGGACATCTGTGATCCTTATTACACCGAAATTATTCGTGGT
ATCGAAGACGCCGCGATGGAACACGGTTATCTGGTACTGCTGGGTGACAGCGGTCAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACTTGGTGTTTACCAAACAGGCGGACGGTATGCTATTGCTGGGGACCGATTTGCCGTTTGACGTGAGCAAACCTG
AACAGAAAAACCTGCCACCGATGGTGATGGCGTGTGAGTTTGCGCCAGAACTTGAATTGCCGACGGTGCATATCGATAAC
CTGACATCTGCCTTTGAAGCGGTGAACTATCTGACGCAGATGGGGCACAAACGCATCGCGCAGATTGCCGGCCCTGAAGC
GGCGGTGTTGTGTCAGTTCCGTCAGCAAGGGTATCAACAAGCCCTGCGCCGCGCGGGGATTTCACGTAATCCAACCTACA
GTACCATCGGTGACTTTACGTTTGAGTCGGGTGCCAAAGCGGTGCGCCAATTGATGGCCCTGCCGGAGCCGCCGACAGCC
ATTTTCTGTCACAACGATACCATGGCGATTGGTGCCATTCAGGAAGCTAAGCGTTTGGGCATGCGTGTGCCGCAAGACCT
GTCTGTGGTCGGCTTTGATGACATTCAGTTTGCGCAGTACTGCGATCCACCGCTAACCACCATTTCTCAGCCGCGTTACG
AGATCGGCCGTCAGGCGATGTTGATGATGCTTGAGTTACTGCGGGGTCATGATGTGCGTGCGGGCTCGCGTCTGCTCGAC
ACCCAATTGGTCATTCGTGAGAGTGCAGCGCCGCCCCGCTCGGCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.373

99.104

0.925
  cytR Vibrio parahaemolyticus RIMD 2210633

90.149

100

0.901

Multiple sequence alignment