Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   EPB61_RS05325 Genome accession   NZ_CP035694
Coordinates   1179811..1181862 (+) Length   683 a.a.
NCBI ID   WP_154179870.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2419-04     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1174811..1186862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB61_RS05315 - 1175484..1176626 (+) 1143 WP_154179868.1 exonuclease SbcCD subunit D -
  EPB61_RS05320 - 1176630..1179671 (+) 3042 WP_154179869.1 SMC family ATPase -
  EPB61_RS05325 cqsS 1179811..1181862 (+) 2052 WP_154179870.1 hybrid sensor histidine kinase/response regulator Regulator
  EPB61_RS05330 cqsA 1182024..1183205 (-) 1182 WP_014257352.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  EPB61_RS05335 - 1183423..1184382 (-) 960 WP_004728184.1 TDT family transporter -
  EPB61_RS05340 clcA 1184543..1185940 (-) 1398 WP_004728183.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78642.44 Da        Isoelectric Point: 6.1340

>NTDB_id=343808 EPB61_RS05325 WP_154179870.1 1179811..1181862(+) (cqsS) [Vibrio furnissii strain 2419-04]
MEVVKKIYQYAEPNLTLVGWMGFIGFPFYYYVWAHVFPQPYESLLLRGFCSCLFGGIVFRNAVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLAQAALSVAAAYGAVYWLQHYEPQHVILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQPANPTQGAYIDGQDLTLLHEILGNADE
VIHTGNETIDLLLTSIDENRVSTSTFKRLSAKEVVDHALHSFSYKRALDRQAVTLNAINDFDYFGSETLLKFALYNLLKN
AFYYQNSEHFHIEVTLITRGQENLIIVRDNGVGIAPDRLGDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIRCASVLG
EWTEFTLSFPQYHSERVSHIKLDLMKNKSVLYVGTQGLMSRHLSEKAFYQGFRLHHATLSEALTREEYEFEYDIILLDLE
QIGDQWQSLVELETKLHFTEAKIVYLYDKQRAYPINIERHLRVVPLDIRQLLLDTDKELDQLLFEVDDVAPDHNVVPIKQ
PKYERRILVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAMEHNEFDLILMDIEMPIIDGIEATRVIRDSNKPYCHI
PIVGHTGDNSPLTIEKIHQSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=343808 EPB61_RS05325 WP_154179870.1 1179811..1181862(+) (cqsS) [Vibrio furnissii strain 2419-04]
ATGGAAGTCGTAAAGAAAATATACCAATATGCTGAACCGAACCTCACGTTAGTGGGGTGGATGGGGTTTATTGGTTTTCC
GTTTTACTACTATGTGTGGGCGCATGTGTTCCCTCAGCCCTATGAATCGCTGCTGCTGCGCGGTTTCTGTTCGTGCCTGT
TTGGCGGCATTGTGTTTCGAAACGCAGTGCCGAAGTTGTGGCAGCGCTACTTACCTTACTATTACCTGTTTATGATCGGC
TTCTGTTTGCCGTTCTTCTTTGCCTATATGATGTTGATGAACGATTGGTCCACGGTGTGGGCGATGTCATTCATGGCATC
CATCTTCCTACATATTCTGCTGGTTCATGAGACCAAAGTGATGCTGGCGCAAGCTGCGTTATCCGTCGCGGCGGCGTATG
GCGCCGTGTATTGGCTGCAACATTACGAACCACAGCATGTCATTTTGTGGCCTTATGTGCCGATTTTCCTGTTCACTTAC
GTGTTCGGGAATCTGTTCTATTTCAGAAACCAAAGCTCGCATGAGTCGAAGGTGTCGATTGCGAAATCCTTTGGCGCCGG
GATCGCACATGAAATGCGTAACCCGCTTAGTGCGTTGAAATCGTCGGTTGATGTGCTGCGTTCGATTTTGCCCGCACAGC
CGGCCAATCCAACCCAAGGTGCATACATCGACGGACAGGATCTGACTTTGCTGCATGAAATTTTGGGCAACGCTGACGAA
GTGATCCACACCGGGAACGAAACCATCGACCTGTTACTCACGTCTATCGATGAAAACCGCGTGTCGACGTCAACATTCAA
GCGTTTGTCCGCCAAAGAGGTGGTTGACCACGCCCTGCATTCCTTCTCGTACAAACGCGCGTTAGATCGTCAGGCCGTCA
CACTCAACGCCATCAACGATTTTGACTATTTCGGCAGTGAAACCCTGCTGAAATTTGCCCTCTACAACTTATTGAAAAAT
GCCTTTTACTATCAGAACAGTGAACATTTTCATATCGAAGTGACGCTCATCACTCGGGGCCAAGAAAACCTCATCATCGT
ACGAGATAACGGCGTGGGCATCGCCCCCGATCGCTTGGGTGACATTTTTAAGGACTTCTATACCTTTGGCAAAAATGGCA
GTTACGGTTTGGGTTTGCCGTTTTGTCGCAAGGTGATGAAGTCGTTCGGTGGCAACATCCGTTGTGCCTCCGTGCTGGGG
GAATGGACGGAGTTCACGTTAAGTTTTCCTCAATATCACTCTGAACGCGTCTCACACATCAAACTGGATTTAATGAAAAA
TAAATCGGTGTTGTATGTTGGTACGCAAGGGCTGATGAGCCGACATCTAAGCGAGAAAGCGTTTTACCAAGGATTTCGCC
TACATCACGCAACGCTGAGCGAGGCGTTAACGCGTGAAGAGTACGAGTTTGAATACGATATTATTCTGCTGGATTTAGAG
CAGATCGGCGATCAGTGGCAGTCATTGGTCGAGCTGGAAACCAAGCTGCATTTTACCGAAGCCAAAATTGTTTACCTTTA
CGACAAGCAACGCGCATACCCCATCAATATTGAGCGCCATTTGCGGGTCGTACCTTTAGACATTCGTCAACTGCTGCTCG
ATACCGACAAAGAACTCGATCAACTGCTGTTTGAGGTGGATGACGTTGCACCGGATCACAATGTTGTGCCGATCAAACAA
CCGAAATATGAACGCCGTATTCTGGTGGTAGATGACAACCAATCCCTGCGCACATTCACAGCGTTGCTGCTTGAAAAGCA
GGGCTATGAAGTGGTGCAGGCCAATGATGGTCAACAGGCGTTGGATGCAATGGAGCACAACGAGTTCGACCTGATTTTGA
TGGACATTGAAATGCCGATCATTGATGGCATTGAAGCGACGCGCGTGATTCGGGATTCCAATAAGCCGTACTGCCATATT
CCGATTGTTGGCCATACCGGGGATAACAGCCCGCTGACAATTGAGAAAATCCACCAATCTGGCATGAACGATTACATCGT
TAAACCGGCCGATAAAGACAAGCTGCTGGGCAAACTGGCCAATTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(567-679)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.064

100

0.592

Multiple sequence alignment