Detailed information NTG0343803

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: EPB58_RS23345
• Genome accession: NZ_CP035693
• Coordinates: 2748718..2750139 (-)
• Length: 473 a.a.
• NCBI ID: WP_154203624.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain 2011V-1164
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2743718..2755139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB58_RS23320	-	2744412..2745062 (+)	651	WP_154203622.1	thiopurine S-methyltransferase	-
EPB58_RS23325	purT	2745139..2746314 (-)	1176	WP_154203623.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
EPB58_RS23330	cdd	2746463..2747350 (-)	888	WP_005445539.1	cytidine deaminase	-
EPB58_RS23335	-	2747606..2748283 (-)	678	WP_005445538.1	LrgB family protein	-
EPB58_RS23340	-	2748285..2748659 (-)	375	WP_005445537.1	CidA/LrgA family protein	-
EPB58_RS23345	sbcB	2748718..2750139 (-)	1422	WP_154203624.1	exodeoxyribonuclease I	Machinery gene
EPB58_RS23350	-	2750629..2750991 (-)	363	WP_050921748.1	cupin domain-containing protein	-
EPB58_RS23355	-	2751131..2751766 (-)	636	WP_154203625.1	LysE family translocator	-
EPB58_RS23360	-	2752360..2753055 (+)	696	WP_042606224.1	aspartate/glutamate racemase family protein	-
EPB58_RS23365	-	2753449..2754258 (+)	810	WP_042606225.1	LysR family transcriptional regulator	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54583.94 Da
• Isoelectric Point: 4.9808

>NTDB_id=343803 EPB58_RS23345 WP_154203624.1 2748718..2750139(-) (sbcB) [Vibrio harveyi strain 2011V-1164]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGIEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQQCLNNLALLRQHPEIREKLISLFSIEREFEKSNDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMMNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=343803 EPB58_RS23345 WP_154203624.1 2748718..2750139(-) (sbcB) [Vibrio harveyi strain 2011V-1164]
ATGCACCAAGACAATCAGCCCACTTTTTTCTTTTTCGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGACCGCCCAAG
CCAGTTTGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTGATGTACTGTCGTCCACCTGCTG
ATTACCTTCCTTCGCCAGAAGCAGCTTTGATCACTGGTATTACACCACAAAAAGCAATGCAAGAAGGCTTACCTGAACCT
GAGTTTATCGCCAAAATTCATGCTGAATTGTCTAAACCAAAGACGACTAGCCTTGGCTACAACAGCATACGTTTTGATGA
TGAAGTCACTCGTTACACTTGCTACCGAAACTTCATCGACCCATACGCATGGAGCTGGCAAAACGGCAACTCACGATGGG
ATTTGCTTGACGTGATGCGAGCATGTCATGCCCTGCGTCCTGAAGGTATTGAATGGCCGGAGAACGATGAAGGCTTTACA
AGCTTCAAGCTAGAGCATTTATCCGTAGCGAATGGCATTGAACACAGCAATGCTCACGATGCGATGGCCGACGTGATTGC
CACGATTGAAATGGCGAAGAAAGTTAAAGCCGCCCAACCTAAGCTATTTGACTACTTTTTCTCGATGCGTAACAAGCGCA
AACTCAATGAGCTGGTTGATATTGTCAATATGACTCCGTTGATGCATGTATCAGGCATGCTTGGGCGTGAATGCCAATAC
ACAAGCTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAACAACGCTGTTATCACGATTGATTTAGCCAAAGATCCTCA
GCCGATCCTTGAACTTTCAGCGGAAGAACTGAAAGAACGCTTGTACACCAAGCGTGATGAATTGGGCGACTTACTGCCTG
TACCAGTGAAGCTAGTGCATCTGAACAAGTGCCCTATTCTCGCTCCAGCAAAAACATTAACCGCGGAAAATGCGGAAGTC
ATTGGTATTGACCGCCAACAATGTTTAAACAATTTAGCGTTGTTGCGCCAACACCCAGAGATCCGAGAGAAGCTGATTAG
TCTATTCTCTATAGAACGTGAATTCGAAAAGAGTAATGACGTTGATACGCAGCTTTACGATGGCTTTTTCTCGCCTGCTG
ATCGCGCTGCTATGGACATCATTCGTGAAACCGATCCGAATAACTTAGCCGCACTGGACATTGAATTCGATGATAAACGA
ATCAAGCCATTGCTTTTCCGTTACCGTGCTCGCCATTATGCAGGCACATTAGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGTGAAGTTTTCGAAAGTCAGATTGAAGAGTACATGATGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATATTAAAATCCGTCTATCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.493	100	0.795