Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EPB58_RS18945 Genome accession   NZ_CP035693
Coordinates   1875564..1876082 (+) Length   172 a.a.
NCBI ID   WP_017189128.1    Uniprot ID   -
Organism   Vibrio harveyi strain 2011V-1164     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1870564..1881082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB58_RS18935 gshA 1873284..1874852 (+) 1569 WP_017817672.1 glutamate--cysteine ligase -
  EPB58_RS18940 - 1874872..1875477 (+) 606 WP_173364781.1 hypothetical protein -
  EPB58_RS18945 luxS 1875564..1876082 (+) 519 WP_017189128.1 S-ribosylhomocysteine lyase Regulator
  EPB58_RS18950 - 1876175..1877449 (-) 1275 WP_005446238.1 CNNM domain-containing protein -
  EPB58_RS18955 - 1877604..1878398 (-) 795 WP_005446240.1 inner membrane protein YpjD -
  EPB58_RS18960 ffh 1878612..1879994 (+) 1383 WP_005446242.1 signal recognition particle protein -
  EPB58_RS18965 rpsP 1880205..1880453 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  EPB58_RS18970 rimM 1880482..1881030 (+) 549 WP_005446245.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19053.86 Da        Isoelectric Point: 5.2440

>NTDB_id=343794 EPB58_RS18945 WP_017189128.1 1875564..1876082(+) (luxS) [Vibrio harveyi strain 2011V-1164]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILKAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=343794 EPB58_RS18945 WP_017189128.1 1875564..1876082(+) (luxS) [Vibrio harveyi strain 2011V-1164]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATTGCGAAAAACATTCTAAAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855

Multiple sequence alignment