Detailed information NTG0343791

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EPB58_RS18815
• Genome accession: NZ_CP035693
• Coordinates: 1852833..1853816 (+)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain 2011V-1164
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1847833..1858816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EPB58_RS18780	ftsB	1847839..1848120 (+)	282	WP_005452106.1	cell division protein FtsB	-
EPB58_RS18785	ispD	1848122..1848832 (+)	711	WP_005452107.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EPB58_RS18790	ispF	1848847..1849323 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EPB58_RS18795	truD	1849369..1850412 (+)	1044	WP_154203409.1	tRNA pseudouridine(13) synthase TruD	-
EPB58_RS18800	surE	1850412..1851188 (+)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
EPB58_RS18805	-	1851188..1851814 (+)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EPB58_RS18810	-	1851829..1852752 (+)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
EPB58_RS18815	rpoS	1852833..1853816 (+)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
EPB58_RS18820	mutS	1853910..1856471 (-)	2562	WP_154203410.1	DNA mismatch repair protein MutS	-
EPB58_RS18825	pncC	1856557..1857039 (+)	483	WP_009703950.1	nicotinamide-nucleotide amidase	-
EPB58_RS18830	recA	1857241..1858284 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=343791 EPB58_RS18815 WP_005452115.1 1852833..1853816(+) (rpoS) [Vibrio harveyi strain 2011V-1164]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=343791 EPB58_RS18815 WP_005452115.1 1852833..1853816(+) (rpoS) [Vibrio harveyi strain 2011V-1164]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTGTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856