Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GAG93_RS09795 Genome accession   NZ_CP045190
Coordinates   1834763..1836190 (-) Length   475 a.a.
NCBI ID   WP_156262415.1    Uniprot ID   -
Organism   Escherichia coli strain NT1F31     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1829763..1841190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAG93_RS09765 (GAG93_10085) yeeZ 1829818..1830642 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  GAG93_RS09770 (GAG93_10090) yeeY 1830688..1831617 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  GAG93_RS09775 (GAG93_10095) yoeI 1831832..1831894 (+) 63 WP_010723108.1 membrane protein YoeI -
  GAG93_RS09780 (GAG93_10100) plaP 1831884..1833242 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GAG93_RS09785 (GAG93_10105) tsuA 1833421..1834479 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  GAG93_RS09790 (GAG93_10110) tsuB 1834493..1834720 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GAG93_RS09795 (GAG93_10115) sbcB 1834763..1836190 (-) 1428 WP_156262415.1 exodeoxyribonuclease I Machinery gene
  GAG93_RS09800 (GAG93_10120) dacD 1836399..1837565 (+) 1167 WP_000830173.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GAG93_RS09805 (GAG93_10125) sbmC 1837684..1838157 (+) 474 WP_122056916.1 DNA gyrase inhibitor SbmC -
  GAG93_RS09810 (GAG93_10130) yeeA 1838355..1839413 (+) 1059 WP_001200905.1 FUSC family protein -
  GAG93_RS09815 (GAG93_10135) tmaR 1839585..1839914 (+) 330 WP_000450409.1 DUF496 family protein -
  GAG93_RS09820 (GAG93_10140) - 1840015..1840197 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  GAG93_RS09825 (GAG93_10145) - 1840260..1840397 (+) 138 Protein_1718 transposase domain-containing protein -
  GAG93_RS09830 (GAG93_10150) - 1840686..1840778 (-) 93 Protein_1719 DUF957 domain-containing protein -
  GAG93_RS09835 (GAG93_10155) yeeW 1840812..1841006 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54409.74 Da        Isoelectric Point: 5.3458

>NTDB_id=343766 GAG93_RS09795 WP_156262415.1 1834763..1836190(-) (sbcB) [Escherichia coli strain NT1F31]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPLLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=343766 GAG93_RS09795 WP_156262415.1 1834763..1836190(-) (sbcB) [Escherichia coli strain NT1F31]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACTTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment