Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   EPB58_RS03095 Genome accession   NZ_CP035692
Coordinates   649183..650280 (+) Length   365 a.a.
NCBI ID   WP_154202408.1    Uniprot ID   -
Organism   Vibrio harveyi strain 2011V-1164     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 644183..655280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB58_RS03065 - 644415..645404 (+) 990 WP_154202403.1 Gfo/Idh/MocA family oxidoreductase -
  EPB58_RS03070 - 645546..646883 (-) 1338 WP_154202405.1 MATE family efflux transporter -
  EPB58_RS03075 - 647007..647321 (-) 315 WP_005453573.1 DUF496 family protein -
  EPB58_RS03080 - 647560..647763 (+) 204 WP_009696233.1 hypothetical protein -
  EPB58_RS03085 - 647857..648510 (+) 654 WP_005453575.1 YceH family protein -
  EPB58_RS03090 - 648507..648833 (+) 327 WP_017188723.1 GIY-YIG nuclease family protein -
  EPB58_RS03095 luxP 649183..650280 (+) 1098 WP_154202408.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  EPB58_RS03100 luxQ 650280..652859 (+) 2580 WP_005453581.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  EPB58_RS03105 - 652927..653589 (-) 663 WP_009696231.1 PilZ domain-containing protein -
  EPB58_RS03110 - 653683..654609 (-) 927 WP_154202410.1 DMT family transporter -
  EPB58_RS03115 - 654759..655214 (+) 456 WP_005453588.1 Lrp/AsnC family transcriptional regulator -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41610.09 Da        Isoelectric Point: 6.7059

>NTDB_id=343759 EPB58_RS03095 WP_154202408.1 649183..650280(+) (luxP) [Vibrio harveyi strain 2011V-1164]
MKKALLFSLISMVGFSPVSHATQVLNGYWGYQEFLDEFPQQRKLTNALAEAVRERPVPFSKNKKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKVSLEKHPDVDFIYACSTDVALGAVEALADLGRSDVMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIETLKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=343759 EPB58_RS03095 WP_154202408.1 649183..650280(+) (luxP) [Vibrio harveyi strain 2011V-1164]
ATGAAAAAAGCGTTACTATTTTCCCTGATTTCTATGGTCGGTTTCTCTCCTGTTTCACATGCAACGCAAGTGCTCAATGG
CTACTGGGGTTATCAAGAGTTCTTGGATGAATTCCCGCAGCAGCGAAAACTCACTAATGCTTTAGCAGAAGCCGTTCGTG
AACGTCCTGTACCATTCTCTAAAAACAAAAAGCGTCCGCTTAAAATATCCGTGGTTTATCCGGGGCAGCAAGTATCTGAT
TACTGGGTAAGAAACATTGCGGCATTTGAAAAGCGCTTGGACAAGCTAAATATCAACTATCAGATCAACCAAGTTTTCAC
ACGCCCTAATGCGGATATTAAGCAGCAAAGCTTGTCATTAATGGAAGCGCTGAAGAGCAAATCCGATTATTTGATTTTTA
CGTTAGATACAACCAGACACCGCAAATTTGTTGAACACGTTCTTGATTCAACAAACACCAAATTGATCTTACAAAATATC
ACGACACCAGTGCGTGAATGGGATAAACATCAACCGTTTTTATATGTCGGATTTGATCATGCGGAAGGCAGCCGTGAATT
AGCGACAGAATTCGGAAAGTACTTTCCGAAGCACACCTATTACAGTGTGCTCTATTTCTCGGAAGGGTACATTAGTGATG
TGAGAGGTGACACGTTTATTCATCAGGTTAACCGTGATAATAACTTTGAACTACAATCAGCGTACTACACTAAAGCAACA
AAGCAGTCGGGATATGATGCTGCAAAAGTAAGTTTAGAAAAGCACCCAGATGTTGATTTTATTTATGCGTGCTCGACTGA
TGTTGCGTTAGGTGCTGTTGAGGCGTTAGCAGATTTAGGGCGAAGTGACGTTATGATCAACGGTTGGGGTGGTGGTTCAG
CAGAGCTTGATGCTATTCAGAAAGGCGACTTAGATATCACTGTCATGCGTATGAATGATGATACTGGTATTGCCATGGCA
GAAGCCATTAAGTGGGATTTGGAAGGAAAACCTGTCCCAACCGTATATTCCGGTGATTTTGAAATTGTTACCAAAGCTGA
TTCACCGGAAAGAATCGAAACGCTGAAGAAGCGTGCATTTAGATATTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.187

99.726

0.63

Multiple sequence alignment