Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GAG93_RS06575 Genome accession   NZ_CP045190
Coordinates   1124927..1125442 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain NT1F31     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1119927..1130442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAG93_RS06535 (GAG93_06815) csrA 1120790..1120975 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  GAG93_RS06560 (GAG93_06840) yqaB 1122157..1122723 (+) 567 WP_122056861.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GAG93_RS06565 (GAG93_06845) yqaA 1122720..1123148 (+) 429 WP_001287454.1 YqaA family protein -
  GAG93_RS06570 (GAG93_06850) gshA 1123221..1124777 (+) 1557 WP_156262390.1 glutamate--cysteine ligase -
  GAG93_RS06575 (GAG93_06855) luxS 1124927..1125442 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  GAG93_RS06580 (GAG93_06860) emrB 1125506..1127044 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GAG93_RS06585 (GAG93_06865) emrA 1127061..1128233 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GAG93_RS06590 (GAG93_06870) emrR 1128360..1128890 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GAG93_RS06595 (GAG93_06875) ygaH 1128981..1129316 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  GAG93_RS06600 (GAG93_06880) ygaZ 1129306..1130043 (-) 738 WP_156262391.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=343756 GAG93_RS06575 WP_001130211.1 1124927..1125442(+) (luxS) [Escherichia coli strain NT1F31]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=343756 GAG93_RS06575 WP_001130211.1 1124927..1125442(+) (luxS) [Escherichia coli strain NT1F31]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731