Detailed information NTG0343753

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GAG93_RS06300
• Genome accession: NZ_CP045190
• Coordinates: 1072383..1073375 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain NT1F31
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1067383..1078375

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GAG93_RS06270 (GAG93_06550)	ispD	1067444..1068154 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GAG93_RS06275 (GAG93_06555)	ispF	1068154..1068633 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GAG93_RS06280 (GAG93_06560)	truD	1068630..1069679 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GAG93_RS06285 (GAG93_06565)	surE	1069660..1070421 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GAG93_RS06290 (GAG93_06570)	pcm	1070415..1071041 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GAG93_RS06295 (GAG93_06575)	nlpD	1071226..1072320 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GAG93_RS06300 (GAG93_06580)	rpoS	1072383..1073375 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GAG93_RS06305 (GAG93_06585)	ygbN	1073469..1074833 (-)	1365	WP_000104429.1	GntP family transporter	-
GAG93_RS06310 (GAG93_06590)	ygbM	1074922..1075698 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
GAG93_RS06315 (GAG93_06595)	ygbL	1075703..1076341 (-)	639	WP_001278994.1	aldolase	-
GAG93_RS06320 (GAG93_06600)	otnK	1076338..1077600 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=343753 GAG93_RS06300 WP_000081550.1 1072383..1073375(+) (rpoS) [Escherichia coli strain NT1F31]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=343753 GAG93_RS06300 WP_000081550.1 1072383..1073375(+) (rpoS) [Escherichia coli strain NT1F31]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715