Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SDEG_RS01750 Genome accession   NC_012891
Coordinates   333182..334252 (+) Length   356 a.a.
NCBI ID   WP_012766581.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 335196..336182 333182..334252 flank 944


Gene organization within MGE regions


Location: 333182..336182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS01750 (SDEG_0359) amiE 333182..334252 (+) 1071 WP_012766581.1 ABC transporter ATP-binding protein Regulator
  SDEG_RS01755 (SDEG_0360) amiF 334245..335168 (+) 924 WP_003057816.1 ATP-binding cassette domain-containing protein Regulator
  SDEG_RS01760 - 335196..336182 (-) 987 WP_041788809.1 IS30 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39535.56 Da        Isoelectric Point: 5.8904

>NTDB_id=34372 SDEG_RS01750 WP_012766581.1 333182..334252(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MTKENNVILTAKDVVVEFDVRDRVLTAIRNVSLELIEGEVLAFVGESGSGKSVLTKTFTGMLESNGRIANGSIVYRGQEL
TGLKTNKEWAKIRGSKIATIFQDPMTSLSPIKTIGSQITEVIIKHQKVSHSKAKELALDYMNKVGIPNATKRFDDYPFEY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
FGTVEEIFYDPRHPYTWSLLSSLPQLANESGELYSIPGTPPSLYSPIVGDAFALRSEYAMVLDFEETPPAISVSDTHWAK
TWLLHPEAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=34372 SDEG_RS01750 WP_012766581.1 333182..334252(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGACAAAAGAAAATAATGTAATCTTAACTGCCAAAGATGTGGTGGTGGAATTCGACGTGCGCGACCGTGTTTTAACGGC
TATTCGGAACGTTTCTTTAGAGCTTATTGAAGGAGAGGTCCTTGCTTTTGTAGGAGAATCAGGTTCAGGTAAATCTGTTT
TAACCAAGACCTTTACAGGGATGTTGGAGTCTAATGGACGTATTGCCAACGGCTCGATTGTCTACCGTGGTCAAGAATTA
ACAGGACTAAAAACGAATAAGGAATGGGCTAAGATTCGTGGTTCAAAAATTGCTACTATTTTCCAAGATCCGATGACCAG
TCTTAGTCCTATCAAAACCATTGGTAGCCAGATTACAGAGGTCATTATCAAGCATCAAAAAGTTAGCCATTCTAAAGCCA
AAGAATTGGCGCTTGATTATATGAATAAAGTTGGTATTCCAAATGCGACAAAGCGTTTTGACGACTATCCATTTGAATAT
TCAGGTGGTATGCGCCAACGTATTGTTATTGCCATTGCATTAGCTTGCCGCCCAGATATCCTGATTTGTGATGAGCCCAC
AACAGCTCTCGACGTTACAATACAAGCCCAAATTATTGAATTGTTGAAATCACTTCAAAAAGAGTACCATTTTACGATTA
TTTTTATCACTCATGATTTAGGTGTTGTGGCAAGTATTGCTGATAAGGTTGCTGTCATGTATGCTGGTGAAATTGTCGAG
TTTGGAACTGTTGAAGAAATTTTCTATGATCCACGTCATCCTTACACATGGAGTTTATTGTCAAGCTTACCGCAATTAGC
CAATGAGTCAGGAGAACTTTACTCAATTCCAGGGACACCACCGTCACTTTATTCGCCAATCGTTGGAGATGCATTTGCAC
TTCGCTCAGAATATGCTATGGTTTTGGATTTCGAAGAGACACCACCTGCTATTAGTGTATCTGATACTCATTGGGCAAAA
ACATGGCTTTTGCACCCAGAGGCGCCAAAAGTTCAGAAACCGGCAGTTATTCAAGATTTACATCAAAAAATCTTGAAAAA
AATGTCACGACAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-299)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

77.5

100

0.784
  amiE Streptococcus thermophilus LMG 18311

76.389

100

0.772
  amiE Streptococcus thermophilus LMD-9

76.389

100

0.772
  oppD Streptococcus mutans UA159

57.27

94.663

0.542

Multiple sequence alignment